Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq71 114 1e-20 seq21 100 3e-16 seq27 98.7 1e-15 >seq71 Length=978913 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || ||||| || | || ||||| ||||| || |||| || || || | Sbjct 432835 ATGCAAATCTTTGTAAAGACTTTGACTGGCAAGACCATTACTCTCGAAGTTGAATCCTCG 432894 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || |||| |||| ||||| || || || ||| | ||||| Sbjct 432895 GACTCTATTGACAACG-TCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCA 432953 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || || | || ||||| ||||| || || | ||||| ||| |||||||| Sbjct 432954 ACAACGCCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAA 433013 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| | || |||| ||||| |||||| Sbjct 433014 CATCCAAAAGGAATCCACCTTGCACTTGGTTCTGCGT 433050 Score = 111 bits (122), Expect = 2e-19 Identities = 168/235 (71%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 38227 TGAAACTCTTTaaaaaa-aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACC 38285 ||||| ||||| || |||||||| ||||| || || || || ||||| ||||||||| Sbjct 432589 TGAAAACATTTAACAATCATGCAAATTTTCGTCAAGACTCTTACTGGCAAGACCATCACC 432648 Query 38286 GTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGA 38344 | || ||||| || | ||| | | |||| | || |||| || | || ||||| Sbjct 432649 TTGGAAGTCGAATCCTCGGACTCTATTGATAACG-TCAAGCAAAAGATTCAAGATAAAGA 432707 Query 38345 GGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCG 38404 || || || | |||||||| || || || | || ||||| || || || || | || Sbjct 432708 AGGTATCCCTCCTGACCAACAACGTCTTATCTTTGCCGGCAAGCAACTTGAAGATGGCCG 432767 Query 38405 CACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || ||| ||||||||||||||||||||| | || |||| ||||| |||||| Sbjct 432768 TACTCTCTCTGACTACAACATCCAAAAGGAATCCACCTTGCACTTGGTTCTGCGT 432822 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || ||||| || | || ||||| ||||| || |||| || || || | Sbjct 433063 ATGCAAATCTTTGTAAAGACTTTGACTGGCAAGACCATTACTCTCGAAGTTGAATCCTCG 433122 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || |||| |||| ||||| || || || ||| | ||||| Sbjct 433123 GACTCTATTGACAACG-TCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCA 433181 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || || | || ||||| ||||| || || | ||||| ||| |||||||| Sbjct 433182 ACAACGCCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAA 433241 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| | || || || | ||||| ||| Sbjct 433242 CATCCAAAAGGAATCTACTCTCCACCTTGTGCTCCGT 433278 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || ||||| || || || |||| ||||| || | Sbjct 433291 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATTACTCTCGAAGTCGAATCCTCG 433350 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || |||| |||| ||||| || || || ||| | ||||| Sbjct 433351 GACTCTATTGACAACG-TCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCA 433409 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || || | || ||||| || || || || | || || ||| |||||||| Sbjct 433410 ACAACGCCTTATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTACTCTCTCTGACTACAA 433469 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| | || |||| ||||| |||||| Sbjct 433470 CATCCAAAAGGAATCCACCTTGCACTTGGTTCTGCGT 433506 >seq21 Length=571097 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || ||||| || || || |||| || || || | Sbjct 539869 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCG 539810 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || |||| |||| |||||||| || || || | ||||| Sbjct 539809 GACTCTATTGATAACG-TCAAGCAAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCA 539751 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || ||||| | || ||||| ||||| || || | ||||| ||| |||||||| Sbjct 539750 ACAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAA 539691 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| ||| | || || || | ||||| ||| Sbjct 539690 CATCCAAAAAGAATCTACTCTCCACCTTGTGCTCCGT 539654 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || ||||| || || || |||| || || || | Sbjct 540097 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCG 540038 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || |||| || | |||||||| || || || | ||||| Sbjct 540037 GACTCAATTGACAACG-TCAAGCAAAAGATTCAAGACAAAGAAGGCATCCCTCCTGACCA 539979 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || ||||| | || ||||| ||||| || || | ||||| ||| |||||||| Sbjct 539978 ACAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAA 539919 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| ||| | || || || | ||||| ||| Sbjct 539918 CATCCAAAAAGAATCTACTCTCCACCTTGTGCTCCGT 539882 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || ||||| || || || |||| || || || | Sbjct 539641 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCG 539582 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | |||| | || |||| |||| |||||||| || || || | ||||| Sbjct 539581 GACTCAATTGACAACG-TCAAGCAAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCA 539523 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || ||||| | || ||||| ||||| || || | ||||| ||| |||||||| Sbjct 539522 ACAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAA 539463 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || ||| | || |||| ||||| || || Sbjct 539462 CATCCAGAAAGAATCCACCTTGCACTTGGTCCTTCG 539427 >seq27 Length=1513655 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 |||| || | |||||||| || ||||| | |||||||| || || || | || || | Sbjct 550251 AAAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTCTGATCTTTGCTGGTA 550310 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 | || |||| |||| |||||| | |||||||||||||||||||||| | || ||| Sbjct 550311 AGCAATTGGAAGACGGTCGCACCTTGTCCGACTACAACATCCAAAAGGAATCCACCTTGC 550370 Query 38446 ATTTGGTGCTGCGT 38459 | |||||||||||| Sbjct 550371 ACTTGGTGCTGCGT 550384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172087253760