Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq27 123 1e-22 seq26 116 1e-20 seq42 111 6e-19 seq21 111 6e-19 seq71 104 9e-17 >seq27 Length=1513655 Score = 123 bits (136), Expect = 1e-22 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | || || || ||||| ||||||| ||||||||||| | || || || || Sbjct 1427655 ATCATGCAAATCTTTGTCAAAACTTTGACTGGAAAAACTATTACATTGGAAGTCGAGTCC 1427596 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 || ||| |||||| | | || || || |||||||| |||||||| |||||||||||| Sbjct 1427595 TCGGATGCCATTGAGCATGTCAAGCAGAAGATTCAAGACAAGGAAGGCATTCCTCCTGAT 1427536 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGG 391207 ||||||||||| ||||| | || || ||||| || ||||| Sbjct 1427535 CAACAACGTTTGATTTTTGCCGGCAAGCAACTGGAGGATGG 1427495 Score = 113 bits (124), Expect = 2e-19 Identities = 275/413 (67%), Gaps = 9/413 (2%) Strand=Plus/Minus Query 451196 AAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATT 451255 |||||| || ||||| | || || || ||| || || || ||||||||||||| Sbjct 19040 AAGCCCATGATCCAAGTCGACTACAAGGGCGAAGTCAAGACCTTCTCTCCTGAAGAAATC 18981 Query 451256 TCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTT 451315 || || ||||| | | || ||||| ||||| || ||| || | || | | || Sbjct 18980 TCTTCCATGGTGTTGATCAAGATGAAGGAAACCGCTGAAGCTTACTTGGGCACCACCGTC 18921 Query 451316 ACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAA 451375 | | || || || |||||||| ||||| ||||| || | ||||| ||||| || || Sbjct 18920 AAGAACGCTGTCATCACTGTTCCTGCTTACTTCAACGACTCCCAACGTCAAGCCACCAAG 18861 Query 451376 GATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCT 451435 ||| | || ||||| ||||| || || | || || || || ||||| || || ||| Sbjct 18860 GATTCTGGTTTGATTGCCGGTTTGAACGTCTTGCGTATCATCAACGAACCCACTGCCGCT 18801 Query 451436 GCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAA---GaaaaaaaTATTTTAGTA 451492 || | || ||||| | ||| ||| | | || ||| ||| || | | | Sbjct 18800 GCCATTGCTTATGG-TTTGGA----CAAGA-AGACCGAAGGTGAACGCAACGTCCTCATC 18747 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 || ||||| ||||| || || |||| || | | | || |||||||| | ||| Sbjct 18746 TTCGATTTGGGTGGCGGTACCTTTGATGTGTCCTTGTTGACCATCGAAGATGGTATCTTT 18687 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||||| ||||| || |||||| ||||| | || ||||||||| | ||||| Sbjct 18686 GAAGTCAAGGCCACTGCTGGTGACACTCACTTGGGTGGTGAAGATTTCGATAA 18634 >seq26 Length=465297 Score = 116 bits (128), Expect = 1e-20 Identities = 273/410 (67%), Gaps = 3/410 (1%) Strand=Plus/Plus Query 451196 AAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATT 451255 |||||| | || ||||| | | ||||||||||| || || |||| ||||| || Sbjct 296756 AAGCCCGAGATCCAAGTCGAATTCAAAGGTGAAACCAAGCAGTTCACTCCCGAAGAGATC 296815 Query 451256 TCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTT 451315 || || ||||| || || || ||||| ||||| || ||| || | ||| | || Sbjct 296816 TCCTCCATGGTGCTGACCAAGATGAAGGAAACTGCCGAAGCCTACCTGGGTGGCACTGTC 296875 Query 451316 ACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAA 451375 | || ||||| |||||||| || || || ||||| || | || || ||||| || || Sbjct 296876 AAGGACGCAGTCATTACTGTGCCTGCATACTTCAACGACTCGCAGCGTCAAGCTACCAAG 296935 Query 451376 GATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCT 451435 ||||| || |||||||| | || || || || ||||| || || || || || || Sbjct 296936 GATGCCGGTATGATTGCTGGCCTCAACGTCCTACGTATTATCAACGAGCCCACTGCCGCC 296995 Query 451436 GCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTT 451495 ||| | || ||||| || ||| || | | | | | || || || | | ||| Sbjct 296996 GCTATTGCCTATGGCCT-GGACAAGC--AGGCAGAGGGGGAGCGCAACGTTCTGATCTTT 297052 Query 451496 GATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAA 451555 ||| | || || || || |||| || | || || || || || || || |||||| Sbjct 297053 GATCTAGGGGGTGGCACGTTTGATGTGTCGCTGCTGTCGATCGACGACGGCGTCTTTGAA 297112 Query 451556 GTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || ||||| || || || || ||||| || || ||||| |||| || Sbjct 297113 GTCAAGGCGACAGCGGGCGACACCCATCTTGGCGGCGAAGACTTTGACAA 297162 >seq42 Length=317922 Score = 111 bits (122), Expect = 6e-19 Identities = 244/363 (67%), Gaps = 6/363 (2%) Strand=Plus/Minus Query 451242 CTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATA 451301 |||| |||||||| || |||| | | || || ||||| ||||| || ||| ||| Sbjct 189443 CTCCCGAAGAAATCTCTGGTATGATCTTGACCAAGATGAAGGAAACTGCCGAAGCCTATT 189384 Query 451302 TTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAAC 451361 | || ||| || |||| || | || || || ||||| ||||| ||||| |||| Sbjct 189383 TGGGCAAGGAAGTGACCCATGCTGTTGTGACCGTGCCTGCTTACTTCAACGATGCTCAAC 189324 Query 451362 GGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATG 451421 | ||||| || || ||||| || ||||||||||| || | | || || || || | Sbjct 189323 GTCAAGCTACCAAGGATGCCGGTACCATTGCTGGTTTGAACATCTTGCGTATCATCAACG 189264 Query 451422 AACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaa 451481 |||| || || ||||| | || ||||| | ||| || || || | ||||| | Sbjct 189263 AACCCACTGCTGCTGCCATTGCTTATGG-TTTGGACAA--GAACGA---TGGCGAAAAGA 189210 Query 451482 aTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAG 451541 | | | || | ||| || ||||| || ||| |||| ||| | | || ||||| | Sbjct 189209 CTGTCCTCGTTTATGACTTGGGTGGTGGTACTTTTGATGTGTCTCTGTTGTCCATTGATG 189150 Query 451542 ATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTG 451601 | || | |||||||| ||| || ||||||||| || | || ||||||||| | | Sbjct 189149 ACGGTATCTTTGAAGTGTTGGCCACTGCTGGTGATACCCACTTGGGTGGTGAAGATTTCG 189090 Query 451602 ATA 451604 ||| Sbjct 189089 ATA 189087 >seq21 Length=571097 Score = 111 bits (122), Expect = 6e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | || ||||| || || |||||||| || ||||||||||| || |||||||| Sbjct 540100 ATCATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCC 540041 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 || || ||||| | || ||||| |||||||| || ||||| || |||||||| Sbjct 540040 TCGGACTCAATTGACAACGTCAAGCAAAAGATTCAAGACAAAGAAGGCATCCCTCCTGAC 539981 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGG 391207 ||||||||| | || || | || || || || |||||||| Sbjct 539980 CAACAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGG 539940 Score = 100 bits (110), Expect = 1e-15 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||||||| || ||||||||||| || |||||||| || Sbjct 539641 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCG 539582 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || ||||| | || ||||| || ||||| || ||||| || |||||||| ||| Sbjct 539581 GACTCAATTGACAACGTCAAGCAAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAA 539522 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGG 391207 |||||| | || || | || || || || |||||||| Sbjct 539521 CAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGG 539484 Score = 100 bits (110), Expect = 1e-15 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||||||| || ||||||||||| || |||||||| || Sbjct 539869 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCG 539810 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || ||||| | || ||||| || ||||| || ||||| || |||||||| ||| Sbjct 539809 GACTCTATTGATAACGTCAAGCAAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAA 539750 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGG 391207 |||||| | || || | || || || || |||||||| Sbjct 539749 CAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGG 539712 >seq71 Length=978913 Score = 104 bits (114), Expect = 9e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | |||||||| || || || ||||| || || || || | || || ||||| Sbjct 432604 ATCATGCAAATTTTCGTCAAGACTCTTACTGGCAAGACCATCACCTTGGAAGTCGAATCC 432663 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 || || ||||| | || ||||| ||||||||||| ||||| || |||||||| Sbjct 432664 TCGGACTCTATTGATAACGTCAAGCAAAAGATTCAAGATAAAGAAGGTATCCCTCCTGAC 432723 Query 391167 CAACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTAT 391226 ||||||||| | || || | || || |||||||||||||| | ||| | | || || Sbjct 432724 CAACAACGTCTTATCTTTGCCGGCAAGCAACTTGAAGATGGCCGTACTCTCTCTGACTAC 432783 Query 391227 AATATTGATAAGGATGCAACACTTCACTTAGT 391258 || || | ||||| | || | ||||| || Sbjct 432784 AACATCCAAAAGGAATCCACCTTGCACTTGGT 432815 Score = 98.7 bits (108), Expect = 4e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||| || ||||||||||| || || ||||| || Sbjct 433291 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATTACTCTCGAAGTCGAATCCTCG 433350 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || ||||| | || ||||| || ||||| |||||||| || || ||||| ||| Sbjct 433351 GACTCTATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCAA 433410 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| | || || | || || |||||||||||||| | ||| | | || || || Sbjct 433411 CAACGCCTTATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTACTCTCTCTGACTACAAC 433470 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || | ||||| || Sbjct 433471 ATCCAAAAGGAATCCACCTTGCACTTGGT 433499 Score = 93.3 bits (102), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||| || || |||||||| || |||||||| || Sbjct 432835 ATGCAAATCTTTGTAAAGACTTTGACTGGCAAGACCATTACTCTCGAAGTTGAATCCTCG 432894 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || ||||| | || ||||| || ||||| |||||||| || || ||||| ||| Sbjct 432895 GACTCTATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCAA 432954 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| | || || | || || || ||||||||||| | ||| | | || || || Sbjct 432955 CAACGCCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAAC 433014 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || | ||||| || Sbjct 433015 ATCCAAAAGGAATCCACCTTGCACTTGGT 433043 Score = 93.3 bits (102), Expect = 2e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || ||||||| || || |||||||| || |||||||| || Sbjct 433063 ATGCAAATCTTTGTAAAGACTTTGACTGGCAAGACCATTACTCTCGAAGTTGAATCCTCG 433122 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || ||||| | || ||||| || ||||| |||||||| || || ||||| ||| Sbjct 433123 GACTCTATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCAA 433182 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| | || || | || || || ||||||||||| | ||| | | || || || Sbjct 433183 CAACGCCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAAC 433242 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || || ||| Sbjct 433243 ATCCAAAAGGAATCTACTCTCCAC 433266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975715514216312