Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq38 190 2e-43 seq56 107 2e-18 seq34 82.4 9e-11 >seq38 Length=1275103 Score = 190 bits (210), Expect = 2e-43 Identities = 731/1137 (64%), Gaps = 26/1137 (2%) Strand=Plus/Plus Query 106187 TCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCT 106246 |||| || ||||| || || ||||||||||| || |||| | ||||||||| ||| Sbjct 988411 TCCATGGCGGCGTGGTAAATAGTTTCAAAGATTTGACGGTTCAACAGCTTGGCTTCGTCT 988470 Query 106247 GAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 106306 || ||||| | ||||| || ||||| |||| || |||||||| ||||| | |||| Sbjct 988471 GATTCAAAGGGATAGCGCATCAGCATAAAGGCATCGGCCAGACCTTGGACACCGAGACCA 988530 Query 106307 ATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCTCAACG---GGATAAAAATTTCT 106362 || || | ||| ||| | || || | |||| | ||| | | || || | || | Sbjct 988531 ATGGGGCGGTGACGCTTGTTGGAGCGTTCG----GCCTCGATGACAGGGTAGTAGTTGAT 988586 Query 106363 GTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATA 106422 ||| |||| ||| || || ||||| | ||| |||| |||| || || | | | Sbjct 988587 GTCGATGATCTTGTTCAGGTTGCGGGTAATGACCTTGGTGACGGCATGCAGCTTCTTAAA 988646 Query 106423 ATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCA 106482 ||||||| | | | | || | |||||| ||||| ||||| |||| ||||| Sbjct 988647 GTCAAAAGAG-GTG-CGGTTGAC-GACATAGGAGGGAAGAGCGATACTGGCCAGGTTGCA 988703 Query 106483 AACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTT 106542 || || | ||||| | |||||| | |||||| ||||||| ||| | ||| Sbjct 988704 CACGGCGATTTCATCAGGGCTGGAGTACTCGACAATTTCGGTACACAGGTTACTGCACTT 988763 Query 106543 AATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTA 106602 || || || | || | |||||| || |||||| ||||| || || ||||| | Sbjct 988764 GATGGTGCCGAGGTTTTGTTGGTTGGATTTGCGGTTGCAGGCATCTTTATACAGCATAAA 988823 Query 106603 GGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGC--TGGT 106660 ||| | || || || || || | | | || || | ||||| | ||| || | Sbjct 988824 GGGGTTGCCGGTTTCGGTTTGGGCTTCCATGATGGCGTACCACAGCTTTTGGGCCTTGAT 988883 Query 106661 ACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCA 106720 ||||| || || || || ||||| | || || |||| || || || Sbjct 988884 CGTTTGGCGA--GCACGGCCTTCTTGTTCGTAGCGGGCATACAGCTCTTCGAATTCATCG 988941 Query 106721 CCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCC 106780 ||| | ||| ||||| || || | || |||||||| || ||||| | || Sbjct 988942 CCCCATACTTCGTGCAGACCAGGGGCTTCGTTGGGACAGAACAGCGACCACTCGCCGTTG 989001 Query 106781 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CA 106839 | || || ||||||||||| || || || | |||||| | | || ||||| | || Sbjct 989002 GCTTCCACACGCTTCATGAAGAGATCAGGCACCCACAGCGCATAGAACAGATCACGGGCA 989061 Query 106840 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTG 106899 | || || || | || ||| || | || | || | || ||| ||||| Sbjct 989062 CGGATT-TCGTCCTTGCCGACGTTCTTGCGAAGGTCCAAAAAGGTGAAGACATCGGCGTG 989120 Query 106900 CCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTAC 106953 ||| || || || || | || | || || ||||| ||| |||||| || Sbjct 989121 CCAAGGTTCCAGGTACATGGCAAAAGCACCGG---GACGCTTGTTGCCACCTTGATCGAC 989177 Query 106954 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 107013 ||||| || ||| ||| || || || ||||| || | | ||| | || | || || Sbjct 989178 GTAGCGGGCAGTGTTGTTGAAGACTCGGAGCATGGGCAGGAGACCGTTGGAGTAGCCGTT 989237 Query 107014 TGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 107073 || || ||| ||| | |||| | | | ||||||| | ||||| || || Sbjct 989238 GGTGCCAGCAATGTAAGAGCCAGTGGCACGGATGTTGTGGATGTTGAGACCAATGCCGCC 989297 Query 107074 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 107133 ||| ||| |||||||| ||||| | | || ||| | ||||| || | ||| ||||| Sbjct 989298 AGCGGTCTTGGAGATTTGGGCACAAGACTTGAGGGTTTCGTAGATGCCTTCGATCGAGTC 989357 Query 107134 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAA 107193 ||||| ||| | |||||||| |||||| || || | || || || || ||||| Sbjct 989358 TTCCTTCATGGTCAAGAGGAAGCACGAGGACATTTGAGGACGAGGCGTGCCGGCGTTGAA 989417 Query 107194 GAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGAC 107253 ||| || || | || || |||| | | | ||||||| | ||| || ||||| | Sbjct 989418 GAGCGTAGGGCTGGCATGGGTGAAGAAGCGCTCGGACATCAATTGGTAGGTTTCCAAAGC 989477 Query 107254 AGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 || ||| ||||| || ||||| || |||| |||||||||||| | || || ||| || Sbjct 989478 AGCATCGATGTCGTCGCCGTGAATCCCGACGGCCACACGCATGATCAAGTGTTGAGG 989534 >seq56 Length=149020 Score = 107 bits (118), Expect = 2e-18 Identities = 261/390 (67%), Gaps = 4/390 (1%) Strand=Plus/Minus Query 6904 TCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 6963 |||| ||||||||| |||| || ||| |||||||| ||| | || ||||| || Sbjct 79085 TCTACCAAGCCTCTACCTCTGAATTGTACGGTAAGGTGGTGGAAACTCCTCAAAAGGAAA 79026 Query 6964 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGT-TGCGGCACATTGGCTC 7022 || ||||||||||| || || ||| || || | ||| | | ||| | ||| || Sbjct 79025 CCACTCCCTTCTACCCTCGTTCTCCCTATGGTGTGGCCAAGCTGTACGGTT-ACTGGATC 78967 Query 7023 GTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCAT 7082 || || ||||| || || ||| ||||||| || ||| || || |||||||| Sbjct 78966 GTTGTCAACTACCGTGAATCCTACAACATGTTTGCCTGTAACGGTATTCTGTTCAACCAC 78907 Query 7083 GAATCACCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACCGAGGGTATCAAACAA 7142 ||||| || | || || ||||||||| ||||| ||| | || | Sbjct 78906 GAATCTCCCCGCCGTGGCCGTACCTTTGTCACCCGCAAGATCACCCGTGCCGTCGCTGAC 78847 Query 7143 ATC-ATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTG 7201 ||| || || | ||| | | | | | ||||||||||| | || || | ||||| Sbjct 78846 ATCCATTTGGGCCGTCAAGAA-TGCTTGTACTTGGGTAACATCGATGCCAAGCGTGATTG 78788 Query 7202 GGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAAGCCGA 7261 |||||| || |||||||| |||| |||||| | ||| | |||||||| |||||||| Sbjct 78787 GGGTCATGCCCGTGACTATGTCGAAGGTATGTGGTTGATGTTGCAACAAGAAGAAGCCGA 78728 Query 7262 CGAATATGTAGTAGCAACGGGTGAGACCCA 7291 || | ||| | || || ||||| ||||| Sbjct 78727 TGACTTTGTCTTGGCCACCGGTGAAACCCA 78698 >seq34 Length=381833 Score = 82.4 bits (90), Expect = 9e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || |||||| || || || ||| |||| ||||| || |||||| | || Sbjct 49937 GGCAAAGTCGGTGTGGAGGCCTTCGTCGCGGCAAATCAGTTCGTTGGAGAAGGTCAAACC 49996 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||| | ||||||||||||||||| | || | | || | || |||||||| || Sbjct 49997 AGGCATCAAGCCCCGCTTCTTCAACCAGAAGATGGAGGCAAAGGCGCCCGAGAAGAAAAT 50056 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAG 117435 ||| || ||| ||||| || | | ||| || || |||||| Sbjct 50057 ACCTTCGACAGCAGCAAAGGCCACCAAGCGTTCAGCAAAGGAG 50099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979959277360