Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq21 201 3e-46 seq71 188 2e-42 seq27 165 2e-35 seq77 141 2e-28 >seq21 Length=571097 Score = 201 bits (222), Expect = 3e-46 Identities = 170/209 (81%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| || |||||||| || ||||| || | ||||| | ||||||||| Sbjct 539889 ACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCG 539948 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || ||||||||||| ||||| |||||||||||||||||| Sbjct 539949 AGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGA 540008 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || |||||||||||||| ||||| | |||||| ||| ||||| || |||| ||||| Sbjct 540009 ATCTTTTGCTTGACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTG 540068 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | |||||| Sbjct 540069 CCAGTCAGGGTCTTGACGAAGATTTGCAT 540097 Score = 192 bits (212), Expect = 1e-43 Identities = 168/209 (80%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| || |||||||| || ||||| || | ||||| | ||||||||| Sbjct 539661 ACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCG 539720 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || ||||||||||| ||||| ||||||||||||||||| Sbjct 539721 AGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGG 539780 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || |||||||||||||| ||||| | |||||| ||| ||||| || |||| ||||| Sbjct 539781 ATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTG 539840 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | |||||| Sbjct 539841 CCAGTCAGGGTCTTGACAAAGATTTGCAT 539869 Score = 176 bits (194), Expect = 1e-38 Identities = 157/197 (80%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| ||||| || || ||||| || | ||||| | ||||||||||||||||| || Sbjct 539445 GTGGATTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCA 539504 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| || ||||||||||| ||||| ||||||||||||||||| || ||||||||| Sbjct 539505 GCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTTTGCTTG 539564 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| ||||| | |||||| ||| ||||| || |||| ||||| || |||| || Sbjct 539565 ACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTC 539624 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 539625 TTGACAAAGATTTGCAT 539641 >seq71 Length=978913 Score = 188 bits (208), Expect = 2e-42 Identities = 167/209 (80%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| || || ||||| || ||||| || | ||||| | |||||||| Sbjct 433271 ACAAGGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCA 433212 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || |||||||| ||||||||||| || || || ||||| |||||||| Sbjct 433211 AGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGG 433152 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || |||||||||||||| ||||| | |||||| ||| ||||| || |||| ||||| Sbjct 433151 ATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATGGTCTTG 433092 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| ||||| || | |||||| Sbjct 433091 CCAGTCAAAGTCTTTACAAAGATTTGCAT 433063 Score = 179 bits (198), Expect = 8e-40 Identities = 171/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | || ||| | ||| | ||||| || ||||| || ||||| || | ||||| | Sbjct 433053 GAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCG 432994 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| |||||||| || || |||||||| ||||||||||| || || || ||||| Sbjct 432993 GCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTC 432934 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 |||||||| || |||||||||||||| ||||| | |||||| ||| ||||| || || Sbjct 432933 CTTGTCTTGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCAACTTCGAGAGT 432874 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || |||||||| ||||| || | |||||| Sbjct 432873 AATGGTCTTGCCAGTCAAAGTCTTTACAAAGATTTGCAT 432835 Score = 170 bits (188), Expect = 4e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | || ||| | ||| | ||||| || ||||| || ||||| || | ||||| | Sbjct 432825 GAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACG 432766 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| || ||||| || || |||||||| ||||||||||| ||||| || ||||| Sbjct 432765 GCCATCTTCAAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCTTC 432706 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||| |||||||| |||||||||||||| ||||| | |||||| ||| ||||| | ||| Sbjct 432705 TTTATCTTGAATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCGACTTCCAAGGT 432646 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||| || ||||| | |||||| Sbjct 432645 GATGGTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCAT 432607 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | || ||| | ||| | ||||| || ||||| || ||||| || | ||||| | Sbjct 433509 GAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACG 433450 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| || ||||| || || |||||||| ||||||||||| || || || ||||| Sbjct 433449 GCCATCTTCAAGTTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTC 433390 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 |||||||| || |||||||||||||| ||||| | |||||| ||| ||||| || || Sbjct 433389 CTTGTCTTGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCGACTTCGAGAGT 433330 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || ||||| || || || || | |||||| Sbjct 433329 AATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 433291 >seq27 Length=1513655 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || |||||||| ||||||||||| ||||| || | || || | ||||| || Sbjct 1427444 ACAAGATGGAGAGTGGATTCTTTTTGAATGTTGTAGTCTGATAGGGTACGGCCATCCTCC 1427503 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || || || || | |||||||| || |||||||||||||| ||||||||| Sbjct 1427504 AGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCTTGA 1427563 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||| | |||||||| ||||| || ||||| | |||| || ||| Sbjct 1427564 ATCTTCTGCTTGACATGCTCAATGGCATCCGAGGACTCGACTTCCAATGTAATAGTTTTT 1427623 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||||||||| || || | |||||| Sbjct 1427624 CCAGTCAAAGTTTTGACAAAGATTTGCAT 1427652 Score = 127 bits (140), Expect = 5e-24 Identities = 116/144 (81%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||||| || ||||| || ||||| |||| |||| || | || ||||| | |||||||| Sbjct 550365 GTGGATTCCTTTTGGATGTTGTAGTCGGACAAG-GTGCGACCGTCTTCCAATTGCTTACC 550307 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || ||||| || ||||||||||| |||||||| ||||||||||||||||| |||||||| Sbjct 550306 AGCAAAGATCAGACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATCTTTTGCTT 550247 Query 195063 GACGTTCTCAATGGTGTCCGAACT 195086 ||| || || || | ||| || || Sbjct 550246 GACATTGTCGATCGAGTCAGAGCT 550223 >seq77 Length=46662 Score = 141 bits (156), Expect = 2e-28 Identities = 117/143 (82%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| || ||||| || |||||||||| |||||| | |||||||| | |||||||| Sbjct 33826 GTGGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGACCATCTTCCAATTGCTTACCA 33767 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || | ||||| ||||| |||||||| ||||||||||||||||| ||||||||| Sbjct 33766 GCAAAAATCAAGCGTTGCTGGTCAGGAGGAATACCTTCTTTGTCTTGAATCTTTTGCTTG 33707 Query 195064 ACGTTCTCAATGGTGTCCGAACT 195086 || || ||||||| ||| || || Sbjct 33706 ACATTGTCAATGGAGTCAGAGCT 33684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109479979463438