Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq38 196 9e-45 seq34 95.1 2e-14 seq25 86.0 1e-11 >seq38 Length=1275103 Score = 196 bits (216), Expect = 9e-45 Identities = 794/1234 (64%), Gaps = 44/1234 (4%) Strand=Plus/Plus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGA 221478 || ||| |||||||| || || |||||||| ||| | |||||| ||| || Sbjct 988413 CATGGCGGCGTGGTAAATAGTTTCAAAGATTTGACGGTTCAACAGCTTGGCTTCGTCTGA 988472 Query 221479 AGTGAAGGGCATA-CGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 ||||| ||| |||| || | |||| | |||||||| || || || |||| ||| | Sbjct 988473 TTCAAAGGG-ATAGCGCATCAGCATAAAGGCATCGGCCAGACCTTGGACACCGAGACCAA 988531 Query 221538 TGGGCCTGTGTCTCCTGTTGGAAGCGGCCG-CTTCTGGCACGGGATAAAAGTTGACGTCG 221596 |||| | ||| | | ||||||| ||| || | || || || || |||||| |||| Sbjct 988532 TGGGGCGGTGACGCTTGTTGGA-GCGTTCGGCCTCGATGACAGGGTAGTAGTTGATGTCG 988590 Query 221597 ATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTG 221656 || | ||||| ||||| | || ||||| || || | |||||||| | Sbjct 988591 ATGATCTTGTTCAGGTTGCGGGTAATGACCTTGGTGACGGCATGCAGCTTCT------TA 988644 Query 221657 AACACCAACTCGCCGCCGTCGTGGAGGGGTT--CCACAAAAGCGTTTAGGGCAACGCTGG 221714 || | || | || | |||| | ||| | | | || || | |||| Sbjct 988645 AAGTCAAAA-----------GAGGTGCGGTTGACGACATAGGAGGGAAGAGCGATACTGG 988693 Query 221715 CCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGT 221774 ||||||| |||||||| | || || | ||| |||| | || || ||||| |||| Sbjct 988694 CCAGGTTGCACACGGCGATTTCATCAGGGCTGGAGTACTCGACAATTTCGGTACACAGGT 988753 Query 221775 TGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGT 221834 | |||||||||||||| || |||| | || || || ||||| ||| || || || | Sbjct 988754 TACTGCACTTGATGGTGCCGAGGTTTTGTTGGTTGGATTTGCGGTTGCAGGCATCTTTAT 988813 Query 221835 AGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTC 221894 | ||||||||||| ||| || || || || ||| || || ||| || | | Sbjct 988814 ACAGCATAAAGGGGTTGCCGGTTTCGGTTTGGGCTTCCATGATGGCGTACCACAGCTTTT 988873 Query 221895 TGGCGCTCACCGTCCTCTTGACT-GCAC--CCTCGGTCTT-TTCATACCCGGTATAGAGC 221950 ||| | | ||| ||| | |||| ||| |||| ||| || | || ||| ||| Sbjct 988874 GGGCCTTGATCGT----TTGGCGAGCACGGCCT---TCTTGTTCGTAGCGGGCATACAGC 988926 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010 || || | || || | | |||| ||| || || | |||||| | ||| Sbjct 988927 TCTTCGAATTCATCGCCCCATACTTCGTGCAGACCAGGGGCTTCGTTGGGACAGAACAGC 988986 Query 222011 CTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA 222070 ||| | |||| ||| || | || ||||||||| || || | ||||||||| | Sbjct 988987 GACCACTCGCCGTTGGCTTCCACACGCTTCATGAAGAGATCAGGCACCCACAGCGCATAG 989046 Query 222071 AAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCA 222130 || ||||| | || || || ||| |||| ||| || | || |||||||| Sbjct 989047 AACAGATCACGGGCACGGATTTCGTCCTTGCCGACGTTCTTGCGAAGGTCCAAAAAGGTG 989106 Query 222131 AAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCA 222190 || | || |||||||| || ||||| || | ||| | ||| ||||| |||||||||||| Sbjct 989107 AAGACATCGGCGTGCCAAGGTTCCAGGTACATGGCAAAAGCACCGGGACGCTTGTTGCCA 989166 Query 222191 CCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTT 222249 || ||||| | | | ||| | |||||||| || || | || | || ||||| Sbjct 989167 CCTTGATCGA-CGTAGCGGGCAGTGTTGTTGAAGACTCGGAGCATGGGCAGGAGACCGTT 989225 Query 222250 GGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG-ACA 222308 ||| ||||||||||| |||||| | || ||| | | ||| ||| | | Sbjct 989226 GGAGTAGCCGTTGGTGCCAGCAATGTAAGAGCCAGTGGCACGGATGTT-GTGGATGTTGA 989284 Query 222309 TGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGC 222368 || || || || ||| || ||||| ||| || |||||| || || ||||| Sbjct 989285 GACCAATGCCGCCAGCGGTCTTGGAGATTTGGGCACAAGACTTGAGGGTTTCGTAGATGC 989344 Query 222369 CCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGG 222428 | || || ||||| ||||| | | ||| || || || || ||||| |||| | | Sbjct 989345 CTTCGATCGAGTCTTCCTTCATGGTCAAGAGGAAGCACGAGGACATTTGAGGACGAGGCG 989404 Query 222429 AACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGT 222488 | |||||| || ||||| || ||||| || || ||| ||| | ||||||| | || Sbjct 989405 TGCCGGCGTTGAAGAGCGTAGGGCTGGCATGGGTGAAGAAGCGCTCGGACATCAATTGGT 989464 Query 222489 ACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACA 222548 | || || | | |||||| ||| ||||||||| | ||| | |||| || Sbjct 989465 AGGTTTCCAAAGCAGCATCGATGTCGTCGCCGTGAATCCCGACGGCCACACGCATGATCA 989524 Query 222549 TGTACTGGGGCCTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCA 222605 || || || | || |||| ||| | || || ||||| || || ||||| Sbjct 989525 AGTGTTGAGGACGCTCAGCCAC-TTTCCCATTGATCT--TGAGCAAATAAGACCGTTCCA 989581 Query 222606 GAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTC 222639 |||| ||||| |||||||||||| | |||| || Sbjct 989582 GAGTTTTGAAGCCAAAGTAGTTGTAGCCAAAATC 989615 >seq34 Length=381833 Score = 95.1 bits (104), Expect = 2e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 |||| || || |||| |||||||||||||| || || || || ||| || | ||| Sbjct 50095 TTTGCTGAACGCTTGGTGGCCTTTGCTGCTGTCGAAGGTATTTTCTTCTCGGGCGCCTTT 50036 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989 || ||||||||||| | ||| || ||| ||||| || || ||| |||||||| Sbjct 50035 GCCTCCATCTTCTGGTTGAAGAAGCGGGGCTTGATGCCTGGTTTGACCTTCTCCAACGAA 49976 Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036 || || || | ||||| || ||||||| || |||||||| ||||| Sbjct 49975 CTGATTTGCCGCGACGAAGGCCTCCACACCGACTTTGCCTGTCTGCT 49929 >seq25 Length=485700 Score = 86.0 bits (94), Expect = 1e-11 Identities = 168/244 (69%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 221406 CGCAAGACTGCGTC-AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTC 221464 |||||||| || || || || |||||||||||||| ||||| || |||||| | | Sbjct 238437 CGCAAGAC-GCTTCCAGTGCTGCGTGGTAGATGGTTTCAAAAATATCCTTGTTCAATTGG 238379 Query 221465 TTGGCCTCGGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGT 221524 ||| ||||| || ||| |||| ||||||| | ||| |||||||||| || || Sbjct 238378 CGGGCTTCGGGCGATTCGAATGGCAAGCGCAGCAGCAAGAAGGCGTCGGCCAGACCTTGG 238319 Query 221525 ACTCCGATACCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGAT 221582 || |||| ||| | || | || | | ||||| ||| |||||| ||| |||| Sbjct 238318 ACGCCGAGACCCACAGGGCGATGGCGCATGTTGCTCTTTCGG--GCTTCTTCCACTGGAT 238261 Query 221583 AAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCA 221642 | ||| || || || | ||||| ||||| | |||| || || || || ||| || Sbjct 238260 AGTGGTTCACATCAATGACCTTGTTCAGGTTGTGGGTGACCACCTTGACAACGTCGTGCA 238201 Query 221643 GCTT 221646 |||| Sbjct 238200 GCTT 238197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843476396160