Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq71 93.3 4e-14 >seq71 Length=978913 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| |||||||| || || || || || |||||||| |||| ||| | || Sbjct 433063 ATGCAAATCTTTGTAAAGACTTTGACTGGCAAGACCATTACTCTCGAAGTTGAATCCTCG 433122 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | | | |||||||||| ||| ||||| || || | ||| || ||| Sbjct 433123 GACTCTATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCAA 433182 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | ||||||||||| ||||| || | |||||| ||| | | || || ||| Sbjct 433183 CAACGCCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAAC 433242 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || ||||| ||||||||||| ||| Sbjct 433243 ATCCAAAAGGAATCTACTCTCCAC 433266 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| |||||||| || || || || || |||||||| |||| ||| | || Sbjct 432835 ATGCAAATCTTTGTAAAGACTTTGACTGGCAAGACCATTACTCTCGAAGTTGAATCCTCG 432894 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | | | |||||||||| ||| ||||| || || | ||| || ||| Sbjct 432895 GACTCTATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCAA 432954 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | ||||||||||| ||||| || | |||||| ||| | | || || ||| Sbjct 432955 CAACGCCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAAC 433014 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||| ||||| || ||||| |||| Sbjct 433015 ATCCAAAAGGAATCCACCTTGCACTTGGT 433043 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || || || || ||||| |||| ||| | || Sbjct 433291 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATTACTCTCGAAGTCGAATCCTCG 433350 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | | | |||||||||| ||| ||||| || || | ||| || ||| Sbjct 433351 GACTCTATTGACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCAA 433410 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | ||||||||||| ||||| ||| | |||||| ||| | | || || ||| Sbjct 433411 CAACGCCTTATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTACTCTCTCTGACTACAAC 433470 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||| ||||| || ||||| |||| Sbjct 433471 ATCCAAAAGGAATCCACCTTGCACTTGGT 433499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425404208953206