Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq21 147 1e-29 seq27 141 6e-28 seq71 138 7e-27 seq1 114 8e-20 seq77 102 5e-16 seq42 100 2e-15 seq20 89.7 3e-12 >seq21 Length=571097 Score = 147 bits (162), Expect = 1e-29 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| || || ||| |||||| | || || |||| ||||| Sbjct 539876 ACGGAGACGGAGCACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGT 539935 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| || ||||| |||||||| || ||||||||||| |||||||| || || Sbjct 539936 GCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCC 539995 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| ||||||||||||||||| ||||| ||||| | || | | | | ||| || Sbjct 539996 TTCTTTGTCTTGAATCTTTTGCTTGACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAG 540055 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||||| || || || || ||||| ||||| ||||| Sbjct 540056 AGTAATAGTCTTGCCAGTCAGGGTCTTGACGAAGATTTG 540094 Score = 143 bits (158), Expect = 2e-28 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| || || ||| |||||| | || || |||| ||||| Sbjct 539648 ACGGAGACGGAGCACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGT 539707 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| || ||||| |||||||| || ||||||||||| |||||||| || || Sbjct 539708 GCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCC 539767 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| |||||||| |||||||| ||||| ||||||| || | | | | ||| || Sbjct 539768 TTCTTTGTCTTGGATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCAACTTCGAG 539827 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||||| || || || || ||||| || || ||||| Sbjct 539828 AGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAGATTTG 539866 Score = 120 bits (132), Expect = 2e-21 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| ||||| | | |||||| || ||||| |||||||| || ||||||||| Sbjct 539463 TTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGT 539522 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || |||||||| || ||||| |||||||| |||||||| ||||| ||||| | || Sbjct 539523 TGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTTTGCTTGACGTTGTCAATTGAGTCC 539582 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | ||| || |||||||| || || || || ||||| || || ||||| Sbjct 539583 GAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAGATTTG 539638 >seq27 Length=1513655 Score = 141 bits (156), Expect = 6e-28 Identities = 165/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || |||||||| || || |||||| || || || || | ||| || Sbjct 1427431 ACGGAGACGAAGGACAAGATGGAGAGTGGATTCTTTTTGAATGTTGTAGTCTGATAGGGT 1427490 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || |||||||| || |||||||| | ||||||||||||||||||||| || Sbjct 1427491 ACGGCCATCCTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCAGGAGGAATGCC 1427550 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||||||||||||| || |||||| ||||| | ||| | | | | || ||| Sbjct 1427551 TTCCTTGTCTTGAATCTTCTGCTTGACATGCTCAATGGCATCCGAGGACTCGACTTCCAA 1427610 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||||||| || || | ||| || || || ||||| Sbjct 1427611 -TGTAATAGTTTTTCCAGTCAAAGTTTTGACAAAGATTTG 1427649 Score = 105 bits (116), Expect = 4e-17 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| | |||||| |||||||| || ||||||||||| ||||||||||| ||||| ||| Sbjct 550323 TCTTCCAATTGCTTACCAGCAAAGATCAGACGTTGTTGGTCAGGAGGAATACCTTCTTTG 550264 Query 480678 TCTTGAATCTTTTGTTTGACA 480698 |||||||||||||| |||||| Sbjct 550263 TCTTGAATCTTTTGCTTGACA 550243 Score = 100 bits (110), Expect = 2e-15 Identities = 160/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 474653 ttttCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCG--AGCT 474710 || || || ||| |||| ||||| ||||| || ||| ||||| ||||||| |||| Sbjct 18998 TTCTCTCCTGAAGAAATCTCTTCCATGGTGTTGATCAAGATGAAGGAAACCGCTGAAGCT 18939 Query 474711 CATATCTTGGACAAGAA-GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGAT 474769 | ||||| || | || | | || || || |||||||| || || || || || Sbjct 18938 TA---CTTGGGCACCACCGTCAAGAACGCTGTCATCACTGTTCCTGCTTACTTCAACGAC 18882 Query 474770 TCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATT 474829 || ||||||||||| || || ||| | || ||||| ||| | || || || ||||| Sbjct 18881 TCCCAACGTCAAGCCACCAAGGATTCTGGTTTGATTGCCGGTTTGAACGTCTTGCGTATC 18822 Query 474830 ATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || ||||| || || || || ||||||||||| | || ||||| Sbjct 18821 ATCAACGAACCCACTGCCGCTGCCATTGCTTATGGTTTGGACAAGAA 18775 >seq71 Length=978913 Score = 138 bits (152), Expect = 7e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| || || ||| ||| || | || || |||| ||||| Sbjct 433284 ACGGAGACGGAGCACAAGGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGT 433225 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||||||||| ||||| |||||||| ||||| |||||||| ||||| || || || Sbjct 433224 GCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACC 433165 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||||||| |||||||| ||||| ||||||| || | | | | ||| || Sbjct 433164 TTCCTTGTCTTGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCAACTTCGAG 433105 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || | |||||| || || ||||| Sbjct 433104 AGTAATGGTCTTGCCAGTCAAAGTCTTTACAAAGATTTG 433066 Score = 132 bits (146), Expect = 3e-25 Identities = 135/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| ||||| | | ||||||||||||||| || ||||| |||||||||||| Sbjct 432785 TTGTAGTCAGAGAGAGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAGATAAGACGTTGT 432726 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || |||||||| || ||||| || |||||||||||||| ||||| ||||||| || Sbjct 432725 TGGTCAGGAGGGATACCTTCTTTATCTTGAATCTTTTGCTTGACGTTATCAATAGAGTCC 432666 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | ||| | ||| || || || || || |||||||| ||||||||||| Sbjct 432665 GAGGATTCGACTTCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTGACGAAAATTTG 432610 Score = 123 bits (136), Expect = 2e-22 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| ||||| | | ||||||||| ||||| |||||||| ||||| |||||| Sbjct 433013 TTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGT 432954 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || ||||| || || |||||||||||||| |||||||| ||||| ||||||| || Sbjct 432953 TGGTCAGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTGTCAATAGAGTCC 432894 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | ||| || ||||| || || || || | |||||| || || ||||| Sbjct 432893 GAGGATTCAACTTCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTTACAAAGATTTG 432838 Score = 123 bits (136), Expect = 2e-22 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| ||||| | | ||||||||||||||| |||||||| ||||| |||||| Sbjct 433469 TTGTAGTCAGAGAGAGTACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATAAGGCGTTGT 433410 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || ||||| || || |||||||||||||| |||||||| ||||| ||||||| || Sbjct 433409 TGGTCAGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTGTCAATAGAGTCC 433350 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | ||| || |||||||| || || || | ||||| || || ||||| Sbjct 433349 GAGGATTCGACTTCGAGAGTAATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTG 433294 >seq1 Length=1790259 Score = 114 bits (126), Expect = 8e-20 Identities = 133/178 (75%), Gaps = 6/178 (3%) Strand=Plus/Plus Query 474736 TGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGC 474795 ||| || |||||||| || || || ||||| ||||||||||||||||| || || || || Sbjct 762260 TGCTGTCATTACTGTGCCTGCTTACTTTAACGATTCTCAACGTCAAGCTACCAAGGACGC 762319 Query 474796 GGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACT 474855 || ||||||||||| || || | |||||||| || ||||| || || || || | Sbjct 762320 TGGTGCCATTGCAGGTCTGAACGTGCTGCGTATTATCAACGAACCTACCGCTGCTGCCAT 762379 Query 474856 TGCTTATGGTCTTGATAAGAATTCTGACAAA---GAAGTAAATGTTTTAATCTTTGAT 474910 ||||||||| | || |||||||| |||| ||| ||||| | ||||||||| Sbjct 762380 TGCTTATGGCTTGGACAAGAATTC---CAAAGGTGAACACAATGTCCTTATCTTTGAT 762434 Score = 102 bits (112), Expect = 5e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 474345 TAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAAATAATTGCCA 474404 ||||||||||||| |||||| | || |||||||||| || ||||| ||||||| Sbjct 761699 TAGGAACTACTTATTCTTGTGTTGGCGTGTGGCAAAATGACCGTGTTGAAATCATTGCCA 761758 Query 474405 ATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACATCTTA 474464 | |||||||| || | || |||||||| | ||| | || || || || |||| ||||| Sbjct 761759 ACGACCAAGGCAACCGTACCACACCATCGTTTGTGGCCTTCACCGACACCGAACGTCTTA 761818 Query 474465 TTGGAGATGCTGCTAA 474480 |||| |||||||| || Sbjct 761819 TTGGTGATGCTGCCAA 761834 Score = 87.8 bits (96), Expect = 1e-11 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 475969 CAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAAT 476028 ||| || || || | || ||||| ||| |||| || || | ||| ||||||| | Sbjct 763291 CAAGAAGTCCGAAATCTTCTCCACCTATGCTGACAACCAGCCTGGTGTGCTCATCCAAGT 763350 Query 476029 CTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGA 476088 |||||||||||| | ||| || || |||||| || || | || | || Sbjct 763351 GTTTGAAGGTGAACGCGCCCGCACAAAGGACAATAACTTGCTCGGCAAGTTCGACCTGAC 763410 Query 476089 AGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGC 476148 || || |||||||||||| | || || ||||| || ||||| ||||||||| | ||||| Sbjct 763411 CGGCATCCCTCCTGCTCCCCGTGGTGTGCCTCAGATCGAAGTCACTTTTGATGTCGATGC 763470 Query 476149 AAATGGTATTCTTAATGT 476166 || |||||||| || || Sbjct 763471 CAACGGTATTCTGAACGT 763488 >seq77 Length=46662 Score = 102 bits (112), Expect = 5e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| | ||||| | |||||| | |||||| ||||||||||| | ||||| Sbjct 33808 TTGTAATCGGAAAGAGTACGACCATCTTCCAATTGCTTACCAGCAAAAATCAAGCGTTGC 33749 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || ||||||||||| ||||| ||||||||||||||||| |||||| ||||| | ||| Sbjct 33748 TGGTCAGGAGGAATACCTTCTTTGTCTTGAATCTTTTGCTTGACATTGTCAATGGAGTCA 33689 Query 480714 G 480714 | Sbjct 33688 G 33688 >seq42 Length=317922 Score = 100 bits (110), Expect = 2e-15 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 474659 CCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTT 474718 || ||| |||| ||| ||| | || |||| ||||| |||| || | ||| || Sbjct 189441 CCCGAAGAAATCTCTGGTATGATCTTGACCAAGATGAAGGAAACTGCCGAAGCCTAT-TT 189383 Query 474719 GGACAAG-AAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACG 474777 || |||| |||| || |||| || | || || || || || || || ||| ||||||| Sbjct 189382 GGGCAAGGAAGTGACCCATGCTGTTGTGACCGTGCCTGCTTACTTCAACGATGCTCAACG 189323 Query 474778 TCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGA 474837 |||||| || || ||||| || | ||||| ||| | || | || ||||| || || || Sbjct 189322 TCAAGCTACCAAGGATGCCGGTACCATTGCTGGTTTGAACATCTTGCGTATCATCAACGA 189263 Query 474838 ACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 ||| || || || || ||||||||||| | || ||||| Sbjct 189262 ACCCACTGCTGCTGCCATTGCTTATGGTTTGGACAAGAA 189224 >seq20 Length=657222 Score = 89.7 bits (98), Expect = 3e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 474738 CAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGG 474797 |||| | || || || || ||||| ||||||||||| || |||||||| || ||||| | Sbjct 613592 CAGTGGTGACGGTGCCTGCCTATTTCAATGATTCTCAGCGACAAGCAACCAAGGATGCTG 613651 Query 474798 GAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTG 474857 | | ||||| ||| | ||||| ||||| | || |||||||| || || || || | | Sbjct 613652 GCACCATTGCTGGTTTGAATGTATTACGCGTCATCAATGAACCCACCGCCGCTGCCTTGG 613711 Query 474858 CTTATGGTCTTGAT 474871 | ||||| ||||| Sbjct 613712 CCTATGGGATTGAT 613725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268174309986872