Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq27 125 1e-23 seq21 105 1e-17 seq71 91.5 2e-13 >seq27 Length=1513655 Score = 125 bits (138), Expect = 1e-23 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| ||||||||||||||||||||||| |||||||| || Sbjct 1427652 ATGCAAATCTTTGTCAAAACTTTGACTGGAAAAACTATTACATTGGAAGTCGAGTCCTCG 1427593 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 ||| ||| | || || | || || ||||| || |||||||| ||||| || ||| Sbjct 1427592 GATGCCATTGAGCATGTCAAGCAGAAGATTCAAGACAAGGAAGGCATTCCTCCTGATCAA 1427533 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| |||||| ||||| || || ||| | | || ||||||| || || Sbjct 1427532 CAACGTTTGATTTTTGCCGGCAAGCAACTGGAGGATGGCCGTACCCTATCAGACTACAAC 1427473 Query 156003 AT 156004 || Sbjct 1427472 AT 1427471 >seq21 Length=571097 Score = 105 bits (116), Expect = 1e-17 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||||| || |||||||| | ||||| ||| || Sbjct 539869 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCG 539810 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || |||| ||||| || | || || ||||| ||||||||||| ||||| || ||| Sbjct 539809 GACTCTATTGATAACGTCAAGCAAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAA 539750 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | ||| || ||||||||||||||| | | ||| | || || || | Sbjct 539749 CAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACA-- 539692 Query 156003 ATATCCAAAGAG 156014 | ||||||| || Sbjct 539691 ACATCCAAAAAG 539680 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||||| || |||||||| | ||||| ||| || Sbjct 539641 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCG 539582 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || ||| ||||| || | || || ||||| ||||||||||| ||||| || ||| Sbjct 539581 GACTCAATTGACAACGTCAAGCAAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAA 539522 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | ||| || ||||||||||||||| | | ||| | || || || || Sbjct 539521 CAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAAC 539462 Query 156003 AT 156004 || Sbjct 539461 AT 539460 Score = 96.9 bits (106), Expect = 5e-15 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||||| || |||||||| | ||||| ||| || Sbjct 540097 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCG 540038 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || ||| ||||| || | || || ||||| ||||||||||| ||||| || ||| Sbjct 540037 GACTCAATTGACAACGTCAAGCAAAAGATTCAAGACAAAGAAGGCATCCCTCCTGACCAA 539978 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | ||| || ||||||||||||||| | | ||| | || || || | Sbjct 539977 CAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACA-- 539920 Query 156003 ATATCCAAAGAG 156014 | ||||||| || Sbjct 539919 ACATCCAAAAAG 539908 >seq71 Length=978913 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || | ||||| || || || || || ||||||||| || Sbjct 432607 ATGCAAATTTTCGTCAAGACTCTTACTGGCAAGACCATCACCTTGGAAGTCGAATCCTCG 432666 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || |||| ||||| || | || || |||||||||||||| || ||||| || ||| Sbjct 432667 GACTCTATTGATAACGTCAAGCAAAAGATTCAAGATAAAGAAGGTATCCCTCCTGACCAA 432726 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | |||||| ||||| || |||||| | | ||| | || || || | Sbjct 432727 CAACGTCTTATCTTTGCCGGCAAGCAACTTGAAGATGGCCGTACTCTCTCTGACTACA-- 432784 Query 156003 ATATCCAAA 156011 | ||||||| Sbjct 432785 ACATCCAAA 432793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870957082400