Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq38 199 5e-45 seq56 107 2e-17 seq44 95.1 1e-13 seq34 89.7 6e-12 seq25 86.0 8e-11 >seq38 Length=1275103 Score = 199 bits (220), Expect = 5e-45 Identities = 209/275 (76%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || ||||||||||| || |||| ||| ||||| ||||||||||||| ||| |||||||| Sbjct 989170 TGATCGACGTAGCGGGCAGTGTTGTTGAAGACTCGGAGCATGGGCAGGAGACCGTTGGAG 989229 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||||||||| || | ||| | ||| | ||| || | ||||| | | || Sbjct 989230 TAGCCGTTGGTGCCAGCAATGTAAGAGCCAGTGGCACGGATGTTGTGGATGTTGAGACCA 989289 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 |||||||| || | ||||||||| | || || ||||| || ||||||||||| ||| Sbjct 989290 ATGCCGCCAGCGGTCTTGGAGATTTGGGCACAAGACTTGAGGGTTTCGTAGATGCCTTCG 989349 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 |||||||| |||||||| || ||| |||||||| || |||| || | | ||||||| Sbjct 989350 ATCGAGTCTTCCTTCATGGTCAAGAGGAAGCACGAGGACATTTGAGGACGAGGCGTGCCG 989409 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAA 1630340 |||||||||||||| || | || |||||| || Sbjct 989410 GCGTTGAAGAGCGTAGGGCTGGCATGGGTGAAGAA 989444 Score = 87.8 bits (96), Expect = 2e-11 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 1628383 TCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCG 1628442 |||||||| || || || ||| ||||| || |||||||| ||||| || || | Sbjct 988951 TCGTGCAGACCAGGGGCTTCGTTGGGACAGAACAGCGACCACTCGCCGTTGGCTTCCACA 989010 Query 1628443 CGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCC 1628502 || ||| ||||| ||| | |||||| || || || || || || || ||| | || Sbjct 989011 CGCTTCATGAAGAGATCAGGCACCCACAGCGCATAGAACAGATCACGGGCACGGATTTCG 989070 Query 1628503 TCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCC 1628562 ||||||||| |||||| ||||| | || || | ||||||||||| || ||| Sbjct 989071 TCCTTGCCGACGTTCTTGCGAAGGTCCAAAAAGGTGAAGACATCGGCGTGCCAAGGTTCC 989130 Query 1628563 AGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||||| |||||| || || |||||| ||| || Sbjct 989131 AGGTACATGGCAAAAGCACCGGGACGCTTGTTGCCACC 989168 >seq56 Length=149020 Score = 107 bits (118), Expect = 2e-17 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| || | | ||||| || || || || ||||| || || | || Sbjct 85290 GCTTGGCCAATTCACCAGGGAGGATCAAACGAACAGCAGTTTGGATTTCACGGGAAGAGA 85349 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| || |||| | || || ||| | ||||| || | | Sbjct 85350 TGGTGGAACGCTTGTTGTAGGCAGCCAACTTGGAAGCTTCAGTGGCAATGCGTTCAAAGA 85409 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| ||||||| || ||||| | |||||||||||| || || |||| Sbjct 85410 TGTCGTTGACAAAGGAGTTCAAGATGGACATGGCCTTGTTGGAGATACCAGTATCAGGGT 85469 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | || ||||| | ||||||||||||| | || ||||| Sbjct 85470 GGACTTGCTTCAACACCTTGTAGATGTAGGAGGAGTA 85506 >seq44 Length=282398 Score = 95.1 bits (104), Expect = 1e-13 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||| || | | ||||| || || || || ||||| || || | | Sbjct 104922 GCTTGGCCAATTCACCAGGGAGGATCAAACGAACAGCAGTTTGGATTTCACGGGAAGAAA 104863 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| || |||| | || |||||| | || || || | | Sbjct 104862 TGGTGGAACGCTTGTTGTAGGCAGCCAACTTGGAAGCTTCGGTGGCAATACGTTCAAAGA 104803 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || ||||||| || ||||| | |||||||||||| || || |||| Sbjct 104802 TGTCGTTGACGAAAGAGTTCAAGATAGACATGGCCTTGTTGGAGATACCAGTATCAGGGT 104743 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | || ||||| | |||||||||||| | || ||||| Sbjct 104742 GGACTTGCTTCAAGACCTTGTAGATGTAGGAGGAGTA 104706 Score = 95.1 bits (104), Expect = 1e-13 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || || ||| | || ||||||||| |||| ||| ||||||| ||| | |||||||| Sbjct 164637 GCTGCTAATTACTTGGATATCAAGCCTTTGCTGGATGTTGGGTGTAAGACCGTGGCCAAT 164578 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||||||||| ||| | | || || |||||||||| ||| ||||| Sbjct 164577 ATGATCAAGGGTAAGACTGCTGAAGAAATCCGCAAGATCTTCAACAT 164531 >seq34 Length=381833 Score = 89.7 bits (98), Expect = 6e-12 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 868718 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGGC 868777 || || |||||||||||||| | ||| || |||| ||||| | || |||||| Sbjct 49668 TCAAAGAAGTTGGTCTTGCCTTGGAGAGAAATCATGTCCATAAAGTCAAAGGGGTTGATG 49727 Query 868778 GTCTTGTAGTGCTTTTCGCATCCGA--GCGACGCGAGCAGGCGGTCGGCGACAAACTCGA 868835 | ||||| |||||| || | |||| | ||||| ||||| || || || || | Sbjct 49728 GATTTGTACACCTTTTCTTGGCCCAAGGCGA--CCAGCAGACGGTCAGCAACGAATTCAA 49785 Query 868836 TGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCA 868895 |||| |||||||| | ||| |||||||| || | || || |||| | ||| | | Sbjct 49786 TGTATTGGCACATCAACGTGGCATTCATGCCAATCAAGGCGACAGGCAAGGCATCGGTTA 49845 Query 868896 CAAACTCTTTCTCGATCTCGACGGCCTCGACGATGAT 868932 || |||| ||||||| |||||| ||||| ||||| Sbjct 49846 AGAATTCTTGTTCGATCTTGACGGCTTCGACAATGAT 49882 >seq25 Length=485700 Score = 86.0 bits (94), Expect = 8e-11 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 1630076 AGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGACTCGCCGTTGG 1630135 |||| ||||||||||| | || || ||||||||||| | ||||||||| |||||||| Sbjct 237548 AGCGAGCCGTGTCGTTGTACACACGCAGCATGGGCACAATGCCGTTGGAGGTGCCGTTGG 237489 Query 1630136 TGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGG 1630195 |||| || | ||| | ||| | | |||| | ||| || | ||| | ||||||| Sbjct 237488 TGCCAGCAATGTACGAGCCAGAGCCGCGGATCTTTTGGAAACTGACGCCTACACCGCCGG 237429 Query 1630196 CCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCGAT 1630247 | || |||||||| | || || | | || || |||||||| ||||| Sbjct 237428 CTGATTTGGAGATCTGGGCACAGGTCATCAAGGTATCATAGATGCCTTCGAT 237377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107129844626138