Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq38 185 1e-40 seq56 163 4e-34 seq44 145 1e-28 seq25 102 1e-15 seq34 89.7 8e-12 >seq38 Length=1275103 Score = 185 bits (204), Expect = 1e-40 Identities = 195/257 (76%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 || ||||| ||||| || |||| ||| ||||| ||||||||||||| || |||||||| Sbjct 989170 TGATCGACGTAGCGGGCAGTGTTGTTGAAGACTCGGAGCATGGGCAGGAGACCGTTGGAG 989229 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||||||||| || | ||| | ||| | ||| || | ||||| | | || Sbjct 989230 TAGCCGTTGGTGCCAGCAATGTAAGAGCCAGTGGCACGGATGTTGTGGATGTTGAGACCA 989289 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 |||||||| || | ||||||||| | || || || || || ||||||||||| ||| Sbjct 989290 ATGCCGCCAGCGGTCTTGGAGATTTGGGCACAAGACTTGAGGGTTTCGTAGATGCCTTCG 989349 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 |||||||| |||||||| ||| || |||||||| || |||| || || | ||||||| Sbjct 989350 ATCGAGTCTTCCTTCATGGTCAAGAGGAAGCACGAGGACATTTGAGGACGAGGCGTGCCG 989409 Query 2073781 GCATTGAAGAGCGTGGG 2073797 || ||||||||||| || Sbjct 989410 GCGTTGAAGAGCGTAGG 989426 Score = 107 bits (118), Expect = 3e-17 Identities = 350/543 (64%), Gaps = 12/543 (2%) Strand=Plus/Plus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 || |||||||| |||| |||||| | | ||||||| ||||| |||||||||||||| || Sbjct 987772 TGATCGACGGTGAACTTGATGGCATCGACGGCAGGACGGGTACGCAGATAGTACATACCC 987831 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCA---TTC 2069367 ||||| || || ||| |||| |||||| || || | || | || || Sbjct 987832 GTCTTCAGACCCTTCTTCCAGCCGTAAAAGTGCATGGAGGTCA---GCTTGCCAAAGTTA 987888 Query 2069368 GGGACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427 || ||| || | | | |||||| ||| || |||| | ||| | |||||||| Sbjct 987889 GGCACGCCAATGAACACGTTGAGACTTTGGGATTGATCGATAAAGGCACCACGGTCGGCA 987948 Query 2069428 GCCATGTCGATGGTCACGCGGTTGGACACCTCCCACACGGTCTTGAACAGGGCCTTGAGA 2069487 ||||| |||||| ||| | ||| | ||||||||||||||| | | ||| ||||| Sbjct 987949 GCCATATCGATGAGGGTGCGTTGGGAGATTTCCCACACGGTCTTGTAGATGGCTTTGAGG 988008 Query 2069488 TGCGGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCCCTGCGCTGCGATGAGGCGG 2069547 | || | | | | | | ||| || ||||| | | | |||| |||| Sbjct 988009 TTATCGGGGATGTTGGGG------ATGTGCTGGACAGAGCCGTTGTCGGACATGATGCGG 988062 Query 2069548 TCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTTG 2069607 | | || |||| | ||| || ||| || | || || ||| | ||||| Sbjct 988063 TTCTTGATTTCATCATTCCAGATGCCAAGCTCCACCAGGTCCTTGAGCAGCCAGGGGTTG 988122 Query 2069608 ACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCG 2069667 | || || || || | || || ||||| ||||| | ||| ||| | |||| Sbjct 988123 GCGACTTGGAATTCACCGGCAAGGACCCGGCGGGTGTAAAGATTGGATGTGTAGGGCTCG 988182 Query 2069668 CACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGC 2069727 | ||| || ||| || || || || || | ||| || |||||| | || || || Sbjct 988183 AAGCATTCGTTGAAGCCGAGCATTTGTGAGGTAGAGGCGGTAGGCATGGGGGCGACCAGG 988242 Query 2069728 AGCGAGTTGCGCAGGCCGTACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCAGCGG 2069787 ||||||||||||| ||||| || | || | || |||||| ||||||||||| || Sbjct 988243 AGCGAGTTGCGCACGCCGTGCTTGCTGACTTGTTCCTTGAGGGCGGCCCAGTCCCAGAGG 988302 Query 2069788 CCG 2069790 || Sbjct 988303 TCG 988305 Score = 86.0 bits (94), Expect = 1e-10 Identities = 152/220 (69%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 2071795 TCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACG 2071854 |||||||| || || || ||| || || || |||||||| |||||| | |||| Sbjct 988951 TCGTGCAGACCAGGGGCTTCGTTGGGACAGAACAGCGACCACTCGCCGTTGGCTTCCACA 989010 Query 2071855 CGGCGCATAAACAGGTC--GCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCT 2071912 || ||| || || || |||| |||||| | || || ||||| || || ||| | | Sbjct 989011 CGCTTCATGAAGAGATCAGGCAC--CCACAGCGCATAGAACAGATCACGGGCACGGATTT 989068 Query 2071913 CCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCT 2071972 | ||||||||| |||||| ||||| | || || || ||||||||||| || | Sbjct 989069 CGTCCTTGCCGACGTTCTTGCGAAGGTCCAAAAAGGTGAAGACATCGGCGTGCCAAGGTT 989128 Query 2071973 CCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||||||| |||||| || || |||||| ||| || Sbjct 989129 CCAGGTACATGGCAAAAGCACCGGGACGCTTGTTGCCACC 989168 >seq56 Length=149020 Score = 163 bits (180), Expect = 4e-34 Identities = 192/257 (75%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||||||||| || |||||||||||| |||||| ||| || | | Sbjct 85251 TGTACTTGGTGACGGCCTTGGTACCTTCAGAGACGGCGTGCTTGGCCAATTCACCAGGGA 85310 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || || || || ||||| || |||| ||| ||| |||||||| || Sbjct 85311 GGATCAAACGAACAGCAGTTTGGATTTCACGGGAAGAGATGGTGGAACGCTTGTT-GTAG 85369 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| | || || ||| | ||||| || | |||||||||||||| |||||| Sbjct 85370 GCAGCCAACTTGGAAGCTTCAGTGGCAATGCGTTCAAAGATGTCGTTGACAAAGGAGTTC 85429 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||||||||| || || ||||| || ||||| | ||||||| Sbjct 85430 AAGATGGACATGGCCTTGTTGGAGATACCAGTATCAGGGTGGACTTGCTTCAACACCTTG 85489 Query 1485709 TAAACAAAGGACGAGTA 1485725 || | |||| ||||| Sbjct 85490 TAGATGTAGGAGGAGTA 85506 >seq44 Length=282398 Score = 145 bits (160), Expect = 1e-28 Identities = 188/257 (73%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||||||||| || |||||||||||| |||||| ||| || | | Sbjct 104961 TGTACTTGGTGACAGCCTTGGTACCTTCAGAGACGGCGTGCTTGGCCAATTCACCAGGGA 104902 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || || || || ||||| || |||| || ||| |||||||| || Sbjct 104901 GGATCAAACGAACAGCAGTTTGGATTTCACGGGAAGAAATGGTGGAACGCTTGTT-GTAG 104843 Query 1485590 GC-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| | || |||||| | || || || | ||||||||||| || |||||| Sbjct 104842 GCAGCCAACTTGGAAGCTTCGGTGGCAATACGTTCAAAGATGTCGTTGACGAAAGAGTTC 104783 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| ||||| | ||||||||||| || || ||||| || ||||| | |||||| Sbjct 104782 AAGATAGACATGGCCTTGTTGGAGATACCAGTATCAGGGTGGACTTGCTTCAAGACCTTG 104723 Query 1485709 TAAACAAAGGACGAGTA 1485725 || | |||| ||||| Sbjct 104722 TAGATGTAGGAGGAGTA 104706 >seq25 Length=485700 Score = 102 bits (112), Expect = 1e-15 Identities = 132/181 (73%), Gaps = 1/181 (1%) Strand=Plus/Minus Query 2073542 GGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGACT 2073601 |||| ||| |||| ||||||||||| | || || ||||||||||||| ||||||||| Sbjct 237556 GGTC-ACAAAGCGAGCCGTGTCGTTGTACACACGCAGCATGGGCACAATGCCGTTGGAGG 237498 Query 2073602 CGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCGA 2073661 |||||||||||| || | ||| | ||| ||| |||| | ||| || | ||| | Sbjct 237497 TGCCGTTGGTGCCAGCAATGTACGAGCCAGAGCCGCGGATCTTTTGGAAACTGACGCCTA 237438 Query 2073662 TGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCGA 2073721 |||||||| | |||||||| | || || | ||| || || |||||||| |||| Sbjct 237437 CACCGCCGGCTGATTTGGAGATCTGGGCACAGGTCATCAAGGTATCATAGATGCCTTCGA 237378 Query 2073722 T 2073722 | Sbjct 237377 T 237377 >seq34 Length=381833 Score = 89.7 bits (98), Expect = 8e-12 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 793926 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCC 793985 || || |||||||||||||| | ||| || |||| ||||| | || |||||| Sbjct 49668 TCAAAGAAGTTGGTCTTGCCTTGGAGAGAAATCATGTCCATAAAGTCAAAGGGGTTGATG 49727 Query 793986 GTCAGGTAGTGCTTCTCGCACCCGA--GCGACGCAAGCAGGCGGTCGGCGACGAATTCAA 794043 | ||| ||| || || | ||||| ||||| ||||| || |||||||||| Sbjct 49728 GATTTGTACACCTTTTCTTGGCCCAAGGCGACC--AGCAGACGGTCAGCAACGAATTCAA 49785 Query 794044 TGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGA 794103 |||| |||||||| | | ||| |||||||| || | || || |||| | ||| | | Sbjct 49786 TGTATTGGCACATCAACGTGGCATTCATGCCAATCAAGGCGACAGGCAAGGCATCGGTTA 49845 Query 794104 CAAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140 || |||| ||||||| |||||| |||| ||||| Sbjct 49846 AGAATTCTTGTTCGATCTTGACGGCTTCGACAATGAT 49882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916234273300046