Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq71 109 4e-19 seq27 107 1e-18 >seq71 Length=978913 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | |||| ||||| || ||||| ||||| || || |||| |||| Sbjct 433047 CAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATC 432988 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || ||||| || ||||| ||||| | || | || |||||||| Sbjct 432987 TTCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTGTC 432928 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || ||||| |||||| | || || || || || || || | || ||||| Sbjct 432927 TTGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATGGT 432868 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | |||||||||||||| ||||| Sbjct 432867 CTTGCCAGTCAAAGTCTTTACAAAGATTTGCAT 432835 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| || ||||| ||||| || || |||| |||| || || ||||| || || ||| Sbjct 433253 TCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAG 433194 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || ||||| ||||| | || | || |||||||| | || ||||| |||||| Sbjct 433193 ATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTG 433134 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || || || || || || || | || |||||||| || || | ||||||||| Sbjct 433133 TCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTTACA 433074 Query 34967 AAGATCTGCAT 34977 ||||| ||||| Sbjct 433073 AAGATTTGCAT 433063 >seq27 Length=1513655 Score = 107 bits (118), Expect = 1e-18 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | ||| || || |||||||| ||||| |||||| | || |||| Sbjct 1427441 AGGACAAGATGGAGAGTGGATTCTTTTTGAATGTTGTAGTCTGATAGGGTACGGCCATCC 1427500 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||||||||| ||||| || |||| ||||| || || | || | || |||||||| Sbjct 1427501 TCCAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCT 1427560 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || ||||| ||||| || | || || |||||| || | || || | Sbjct 1427561 TGAATCTTCTGCTTGAC--ATGCTCAATGGCATCCGAGGACTCGACTTCCAATGTAATAG 1427618 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 | ||||| || | || || |||||||| |||||||| Sbjct 1427619 TTTTTCCAGTCAAAGTTTTGACAAAGATTTGCATGAT 1427655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692347490566