Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq21 129 5e-25 seq27 123 2e-23 seq77 111 1e-19 >seq21 Length=571097 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| | || || || ||||||||||| ||||| || || | | ||||| Sbjct 539654 ACGGAGCACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCC 539713 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || ||||||||| | || | | ||| || || || || || || ||||| Sbjct 539714 ATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTT 539773 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||||| ||||| | || | || ||| || ||| ||||| ||||| || Sbjct 539774 GTCTTGGATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCAACTTCGAGAGTAAT 539833 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| |||||||| | ||| || ||||| || ||||| Sbjct 539834 AGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 539869 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||| || | ||||||||||| || ||||| || || | | ||||| | Sbjct 539427 CGAAGGACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCA 539486 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || ||||||||| | || | | ||| || || || || || || |||||| Sbjct 539487 TCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTG 539546 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | ||||| ||||| | || | | ||| || ||| ||||| ||||| ||| Sbjct 539547 TCTTGGATCTTTTGCTTGACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATA 539606 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | ||| || ||||| || ||||| Sbjct 539607 GTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 539641 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| | || || || ||||||||||| ||||| || || | | ||||| Sbjct 539882 ACGGAGCACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCC 539941 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || ||||||||| | || | | ||| || || || || || || ||||| Sbjct 539942 ATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTT 540001 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||||| ||||| | || | | ||| || ||| ||||| ||||| || Sbjct 540002 GTCTTGAATCTTTTGCTTGACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAAT 540061 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| |||||||| | ||| || || || || ||||| Sbjct 540062 AGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 540097 >seq27 Length=1513655 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| || |||||||||||||||||||| || || | | ||| || Sbjct 1427437 ACGAAGGACAAGATGGAGAGTGGATTCTTTTTGAATGTTGTAGTCTGATAGGGTACGGCC 1427496 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| ||||| ||| | ||||| | ||| ||||| || ||||| || || || Sbjct 1427497 ATCCTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCAGGAGGAATGCCTTCCTT 1427556 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || || |||||| || | | || || || ||||| | || || Sbjct 1427557 GTCTTGAATCTTCTGCTTGACATGCTCAATGGCATCCGAGGACTCGACTTCCAATGTAAT 1427616 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| ||||| || ||||| ||||| || ||||| Sbjct 1427617 AGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCAT 1427652 Score = 107 bits (118), Expect = 1e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 |||||||||||| || | |||||||| ||||| ||||| || || | | ||||||| Sbjct 550384 ACGCAGCACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACC 550325 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | ||| || |||||| | |||| | ||| || || || |||||||| ||||| Sbjct 550324 GTCTTCCAATTGCTTACCAGCAAAGATCAGACGTTGTTGGTCAGGAGGAATACCTTCTTT 550265 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGA 29729 |||||| | ||||| |||||| | || | | |||||| Sbjct 550264 GTCTTGAATCTTTTGCTTGACATTGTCGATCGAGTCAGA 550226 >seq77 Length=46662 Score = 111 bits (122), Expect = 1e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || | |||||||| ||||| ||||| ||||| | || || ||| Sbjct 33845 ACGAAGGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGACC 33786 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| || |||||| | ||||| | |||||| || || |||||||| ||||| Sbjct 33785 ATCTTCCAATTGCTTACCAGCAAAAATCAAGCGTTGCTGGTCAGGAGGAATACCTTCTTT 33726 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGA 29729 |||||| | ||||| |||||| | || | | |||||| Sbjct 33725 GTCTTGAATCTTTTGCTTGACATTGTCAATGGAGTCAGA 33687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385218664786074