Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq26 163 2e-34 seq42 156 3e-32 seq27 152 4e-31 seq1 132 4e-25 >seq26 Length=465297 Score = 163 bits (180), Expect = 2e-34 Identities = 946/1500 (63%), Gaps = 30/1500 (2%) Strand=Plus/Minus Query 281381 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 281440 || || || || || || ||||| ||| || | || || ||| | || || ||| Sbjct 297972 TTGGTGATGGTGATCTTGTTGGACTTGCCCGTCGTCTTGTCCAGGGCTGAGACGTTGAGA 297913 Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 || || |||||||| | |||||| ||||||||||| || || || || | |||| || Sbjct 297912 ATGCCGTTGGCATCGACATCAAAGGTGACTTCAATCTGTGGAACGCCACGGGGAGCTGGG 297853 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| ||| ||| | ||| | ||||| || || || || || | |||| ||| Sbjct 297852 GGGATGCCTGCCAGCTCAAACTTGCCCAGCAGGTTGTTGTCCTTGGTTTGTGTTCGCTCA 297793 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 || ||||| | |||||| || ||| |||||| || | ||| || | || || Sbjct 297792 CCTTCGAACACTTGGATGAGCACACCAGGTTGATTGTCAGCATAGGTCGAGAACACCTCC 297733 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 || || || || | || ||||| | | || | | |||||| | || || || Sbjct 297732 GACTTCTTGGTGGGCACCGTCGTGTTCCGCTTGATCAAAGGGGTCATGACCCCCCCGGCC 297673 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACAT----CAACTAGGACAATATTTTGAAGTTT 281736 ||||| | ||||| || || || ||||||| |||| ||||| | | | ||| Sbjct 297672 GTTTCGATACCAAAGGAGAGGGGGGTGACATCCAGCAAC-AGGAC-CGAGTCGG--TTTT 297617 Query 281737 TTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 281796 |||| || | || ||||| || ||||||| || || ||||| || || ||||| Sbjct 297616 TTCAGATGTGTCGCCTGTGAGAATGGCAGCTTGAACGGCTGCGCCATAGGCCACGGCTTC 297557 Query 281797 ATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCT 281856 |||||||| | | | || ||| || |||| |||||| | || | | | | Sbjct 297556 GTCAGGATTGATGGACTTGCTTGGTTGCTTGCCATGGAAAAAGTCGGACACCATCTTTTG 297497 Query 281857 TACCTTAGGAATACGAGATGAT-CCTCCAACTAATACAATTTCATGCACCTGTGATTTAT 281915 | ||| || ||||| | || | || || || | ||||| || |||||||| || | Sbjct 297496 GATCTTGGGGATACG-GGTGCTGCCACCGACAAGCACAATGTCGTGCACCTGGCCCTTGT 297438 Query 281916 CCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCT----AAACAAG 281971 ||| || | || | || ||||| ||||| || | | ||| || | Sbjct 297437 CCATCTTGGCGTCGCGCAGCACCTTTTCGACGGGATC----CATGGTCTTACGGAATAGA 297382 Query 281972 TCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCG 282031 ||| |||||||| || || | || | || | || || ||||| ||||| Sbjct 297381 TCTTGGTTGAGTTCTTCAAAGCGGGCACGGGTCAAAGAGGTATAGTAGTCAATGCCTTCA 297322 Query 282032 AACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGT 282091 || | || || | || | || || |||| || || || || || || || || ||| Sbjct 297321 AAAAGCGAGTCGATCTCGACGGTGGTCTGAGCAGAGGATGAGAGCGCGCGCTTGGCTCGT 297262 Query 282092 TCACATGCTGTCCTTAGTCTTCGTAAGG--CTTTTGCTGATTGATTCAAATCTGTTTTAT 282149 || || ||||| | || | || | || | | || | | | | ||| |||| | Sbjct 297261 TCGCAGGCTGTTCGCAGGCGGCGGATGGACCGAGGGTTGGT--AGTGAGGTCTTTTTTGT 297204 Query 282150 ATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTC 282209 || | |||||| |||| ||| | | || || || || ||||| ||||| || | Sbjct 297203 GCTTGCGCTTGAACTCTTGTACAAAGTGGGAAACCAGGCGGTTGTCAAAGTCTTCGCCGC 297144 Query 282210 CCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAA 282269 | | | || | || | || || | |||| || | || || || | |||| | Sbjct 297143 CAAGATGGGTGTCGCCCGCTGTCGCCTTGACTTCAAAGACGCCGTCGTCGATCGACAGCA 297084 Query 282270 GAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTT 282329 | | |||||| || ||||| || | |||||| || || || || || ||| Sbjct 297083 GCGACACATCAAACGTGCCACCCCCTAGATCAAAGATCAGAACGTTGCGCTCCCCCTCTG 297024 Query 282330 GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 282389 | || || || ||||| |||| ||| || ||||| || || || ||||| | | | Sbjct 297023 CCTGCTTGTCCAGGCCATAGGCAATAGCGGCGGCAGTGGGCTCGTTGATAATACGTAGGA 296964 Query 282390 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 282449 | || || |||||||| | || ||||| || || ||||| | || || ||||| || | Sbjct 296963 CGTTGAGGCCAGCAATCATACCGGCATCCTTGGTAGCTTGACGCTGCGAGTCGTTGAAGT 296904 Query 282450 ATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTT 282509 ||||||| |||||||| || || || | || || | || || || |||| Sbjct 296903 ATGCAGGCACAGTAATGACTGCGTCCTTGACAGTGCCACCCAGGTAGGCTTCGGCAGTTT 296844 Query 282510 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCA- 282568 ||||| || | | | ||| || || || | ||| |||| | ||||||| |||| Sbjct 296843 CCTTCATCTTGGTCAGCACCATGGAGGAGATCTCTTCGGGAGTGAACTGCTTGGTTTCAC 296784 Query 282569 TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAA 282628 ||||| || |||| | | || || | || | || || || | ||| Sbjct 296783 CTTTGA-ATTCGACTTGGATCTCGGGCTTGGTGTTGTTATCCACTACCTTGAAGGACCAG 296725 Query 282629 TATTTCATATCTGATTGAACACTTTGGTCAT--TAAAATC-TCTACCAATTAATCGTTTT 282685 | ||||| || ||| ||||| || ||| | |||| | || || | || || Sbjct 296724 TGCTTCATGTCATCTTG--CACTTCGG-CATCCTGGAATCGCCGTCCGATCAGGCGCTTG 296668 Query 282686 GCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATC 282745 |||||| | | || ||| || | ||| ||||| | ||||| ||||| || ||| Sbjct 296667 GCATCATACACCGTGTTGCCCACGTTCAATGCTGCTTGGTTCTTGGCCGCATCACCGATC 296608 Query 282746 AGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTC 282805 | |||| | || || || | ||| | ||||| ||||| || || ||||| ||||| Sbjct 296607 AAGCGTTCCGAGTCGGTGAAGGCTACAAACGATGGTGTTGTTCGGTTGCCTTGGTCATTG 296548 Query 282806 GCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAA 282865 ||||| | ||| || | |||||||| || | ||||| | | ||||| |||||| Sbjct 296547 GCAATCACTTCGACGCGGTCGTTTTGCCACACGGCCACACAGGAATAGGTTGTACCTAAA 296488 >seq42 Length=317922 Score = 156 bits (172), Expect = 3e-32 Identities = 251/360 (70%), Gaps = 3/360 (1%) Strand=Plus/Plus Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 |||| ||||||||||| ||||| | |||| || | || || |||| || | | Sbjct 189087 TATCGAAATCTTCACCACCCAAGTGGGTATCACCAGCAGTGGCCAACACTTCAAAGATAC 189146 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 | || |||| ||||| |||| |||||| || |||||||||| ||| ||| || | Sbjct 189147 CGTCATCAATGGACAACAGAGACACATCAAAAGTACCACCACCCAAGTCATAAACGAGGA 189206 Query 282312 CATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 || || |||| | | | ||| || || | |||||| |||| ||||||||||| |||| Sbjct 189207 CAGTCTTTTC---GCCATCGTTCTTGTCCAAACCATAAGCAATGGCAGCAGCAGTGGGTT 189263 Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431 | || || || | ||| | || | ||||||||| | || ||||| || || ||||| | Sbjct 189264 CGTTGATGATACGCAAGATGTTCAAACCAGCAATGGTACCGGCATCCTTGGTAGCTTGAC 189323 Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAA 282491 ||| | |||||| || || ||||| || || | ||| |||| || ||||| || || | Sbjct 189324 GTTGAGCATCGTTGAAGTAAGCAGGCACGGTCACAACAGCATGGGTCACTTCCTTGCCCA 189383 Query 282492 TATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAG 282551 ||| || || |||| ||||| || | || ||||| || |||| ||| |||| Sbjct 189384 AATAGGCTTCGGCAGTTTCCTTCATCTTGGTCAAGATCATACCAGAGATTTCTTCGGGAG 189443 >seq27 Length=1513655 Score = 152 bits (168), Expect = 4e-31 Identities = 356/535 (67%), Gaps = 4/535 (1%) Strand=Plus/Plus Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079 |||| ||||||||||| || || | |||||| | ||||||| |||||||| | | | Sbjct 18463 TCAACACCTTCGAACAAGGAGTCGATTTCAATGGAGGTTTGAGCAGAAGAAGACAAGGTA 18522 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAA 282139 || |||||||||||||| || || | || | || | ||| | | ||| | | Sbjct 18523 CGCTTAGCACGTTCACAAGCAGTGCGGAGACGGCGGAGGGCACGAG--GGTTGCCAGAGA 18580 Query 282140 TCTGTTT--TATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197 | | || | || || | |||||| |||| | | | || ||||| ||||| | Sbjct 18581 TGTCCTTCTTGTACTTGCGCTTGAATTCTTGCATGAAGTGAGAGACGAGACGGTTATCGA 18640 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 |||||||||| ||||| | ||| | || | || || | |||| || | ||||||| Sbjct 18641 AATCTTCACCACCCAAGTGAGTGTCACCAGCAGTGGCCTTGACTTCAAAGATACCATCTT 18700 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 | | | ||| | | |||||| ||| || ||||||| ||| || || || || || Sbjct 18701 CGATGGTCAACAAGGACACATCAAAGGTACCGCCACCCAAATCGAAGATGAGGACGTTGC 18760 Query 282318 TTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 282377 ||| || || || || | |||||| |||| ||||| ||||| ||||| || | Sbjct 18761 GTTCACCTTCGGTCTTCTTGTCCAAACCATAAGCAATGGCAGCGGCAGTGGGTTCGTTGA 18820 Query 282378 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 282437 | || | ||| || || | ||| ||||| || | ||| || |||||||| | ||| | Sbjct 18821 TGATACGCAAGACGTTCAAACCGGCAATCAAACCAGAATCCTTGGTGGCTTGACGTTGGG 18880 Query 282438 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAG 282497 | ||||| || || ||||||||||| || || || | | || | || | |||| Sbjct 18881 AGTCGTTGAAGTAAGCAGGAACAGTGATGACAGCGTTCTTGACGGTGGTGCCCAAGTAAG 18940 Query 282498 CGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGA 282552 | || |||| ||||| || | || | ||| || || |||| ||| ||||| Sbjct 18941 CTTCAGCGGTTTCCTTCATCTTGATCAACACCATGGAAGAGATTTCTTCAGGAGA 18995 Score = 150 bits (166), Expect = 1e-30 Identities = 294/428 (69%), Gaps = 6/428 (1%) Strand=Plus/Plus Query 281381 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 281440 || || || || || || ||||| ||| || | || ||| |||| |||||| | | Sbjct 17761 TTGGTGATGGTGATCTTGTTGGACTTGCCGGTGGTCTTGTCAAGAGCAGACACATTCAAA 17820 Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 ||||| |||||||| | |||||| |||||||| |||||||| || || | ||||||| Sbjct 17821 ATACCGTTGGCATCGACATCAAAGGTGACTTCGATTTGAGGCACACCACGGGGAGCAGGG 17880 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || ||| | || | || || | || || || || ||| |||||| Sbjct 17881 GGGATACCGGACAATTCGAACTTGCCGAGGATGTTGTTGTCCTTGGTGCGGGCACGTTCA 17940 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 || ||||| | |||||| || | | ||| || || | ||| || | || | | Sbjct 17941 CCTTCGAAGACTTGGATCAACACACCGGGTTGGTTGTCGGCATAGGTGGAGAAGATTTCA 18000 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 || || || ||| | || ||||| | | || | | ||||| | ||||||||| Sbjct 18001 GACTTCTTGGTAGGGACGGTAGTGTTACGCTTGATCAAAGCAGTCATCACACCACCAGCA 18060 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATC-AACTAGGACAATATTTTGAAGT-TTTT 281738 ||||| | ||| | ||| | ||||| |||||| ||| | ||| | | || |||| Sbjct 18061 GTTTCGATACCCAAAGACAAAGGAGCGACATCCAACAACAACAGGGAGTCG--GTCTTTT 18118 Query 281739 CATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 || || | |||| |||||| |||| ||||| | |||||||||||| |||||||||||| Sbjct 18119 CAGAGGTGTCACCAGACAAGA-TAGCAGCTTGGACAGCAGCACCATAGGCAACAGCTTCA 18177 Query 281798 TCAGGATT 281805 ||||| || Sbjct 18178 TCAGGGTT 18185 Score = 113 bits (124), Expect = 3e-19 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 282716 GCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATAT 282775 |||||||| | ||||| ||||| || |||| | |||| || || || || | |||||| Sbjct 19293 GCAGCTTGGTTCTTGGCAGCATCACCGATCAAACGTTCGGTATCGGTGAAAGCAACATAA 19352 Query 282776 GATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCAT 282835 || ||||| ||||| ||||||||||| || ||||| |||||||| | | |||||||| Sbjct 19353 GAGGGAGTGGTGCGGTTACCTTGATCGTTGGCAATGATTTCAACACGATCGTTTTGCCAC 19412 Query 282836 ACACCTACACAA 282847 ||||| |||||| Sbjct 19413 ACACCAACACAA 19424 >seq1 Length=1790259 Score = 132 bits (146), Expect = 4e-25 Identities = 195/274 (71%), Gaps = 4/274 (1%) Strand=Plus/Minus Query 282201 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 282260 |||| || ||||| | ||| | || | ||| || | |||| || | || ||||||| Sbjct 762531 CTTCGCCACCCAAGTGAGTGTCACCAGCCGTGGCCTTGACTTCAAAGATGCCTTCTTCAA 762472 Query 282261 GAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 282320 | ||| |||| |||||| ||| || ||||||| |||||| ||||| ||||| || Sbjct 762471 TTGTCAACAGAGATACATCAAAGGTACCGCCACCCAGATCAAAGATAAGGACATTGTGTT 762412 Query 282321 CTTTGTCTTGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAAT 282378 | | ||| || || || | ||||| |||| |||||||| || ||||| || || Sbjct 762411 CACCTT--TGGAATTCTTGTCCAAGCCATAAGCAATGGCAGCAGCGGTAGGTTCGTTGAT 762354 Query 282379 AATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGA 282438 ||| | || || || ||||| ||||| || || || || || ||||| | ||| || Sbjct 762353 AATACGCAGCACGTTCAGACCTGCAATGGCACCAGCGTCCTTGGTAGCTTGACGTTGAGA 762294 Query 282439 ATCGTTAAAATATGCAGGAACAGTAATAACGGCA 282472 ||||||||| || ||||| |||||||| || ||| Sbjct 762293 ATCGTTAAAGTAAGCAGGCACAGTAATGACAGCA 762260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740624803081764