Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq21 125 7e-24 seq27 102 8e-17 >seq21 Length=571097 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 |||||||||||||| |||||||| || | |||| |||||||| || || ||| Sbjct 539901 GTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCA 539960 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| |||||||| || || ||||| |||||||||||||| ||| ||||| || Sbjct 539961 GCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGAATCTTTTGCTTG 540020 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | | ||| | || ||| ||||| | ||| | |||||||| |||| || Sbjct 540021 ACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTC 540080 Query 137395 TTTACGAATATTTGCAT 137411 || ||||| |||||||| Sbjct 540081 TTGACGAAGATTTGCAT 540097 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 |||||||||||||| |||||||| || | |||| |||||||| || || ||| Sbjct 539673 GTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCA 539732 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| |||||||| || || ||||| |||||||||||||| || ||||| || Sbjct 539733 GCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTTTGCTTG 539792 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | | ||| | || ||| ||||| | ||| | |||||||| |||| || Sbjct 539793 ACGTTATCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTC 539852 Query 137395 TTTACGAATATTTGCATA 137412 || || || ||||||||| Sbjct 539853 TTGACAAAGATTTGCATA 539870 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241 ||||| || || | || | || || || | || |||||||| || |||||||| || Sbjct 539412 TGGCCACCACGGAGGCGAAGGACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCA 539471 Query 137242 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 | |||| |||||||| || || |||||| |||| |||||||| || || ||| Sbjct 539472 GAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGA 539531 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || |||||||||||||| || ||||| || | | || | | ||| | || ||| Sbjct 539532 GGGATGCCTTCTTTGTCTTGGATCTTTTGCTTGACGTTGTCAATTGAGTCCGAGGATTCA 539591 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||||| | ||| | |||||||| |||| || || || || ||||||||| Sbjct 539592 ACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCATA 539642 >seq27 Length=1513655 Score = 102 bits (112), Expect = 8e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||||| || || || | || ||||| ||||| |||||||| ||| | Sbjct 550395 CCACCACGGAGACGCAGCACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGAC 550336 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| |||||| | ||| ||||||||| ||||||||||||| || || ||||| Sbjct 550335 AAGGTGCGACCGTCTTCCAATTGCTTACCAGCAAAGATCAGACGTTGTTGGTCAGGAGGA 550276 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 || ||||||||||| ||| ||||| || Sbjct 550275 ATACCTTCTTTGTCTTGAATCTTTTGCTT 550247 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | || | ||| | || ||||||||||| |||||||| | || Sbjct 1427425 GCCACCACGGAGACGAAGGACAAGATGGAGAGTGGATTCTTTTTGAATGTTGTAGT--CT 1427482 Query 137244 CATTGTGCTCG--AGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 || | | || || || ||||| || || ||| | |||| |||||| ||||| ||| Sbjct 1427483 GATAGGGTACGGCCATCCTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCAGGA 1427542 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || |||||||| ||||| ||| || || || | || || | | || | || || Sbjct 1427543 GGAATGCCTTCCTTGTCTTGAATCTTCTGCTTGACATGCTCAATGGCATCCGAGGACTCG 1427602 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| | || | || || || ||||| ||||| || || |||||||| Sbjct 1427603 ACTTCCAATGTAATAGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCAT 1427652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488543303824800