Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq71 152 1e-31 seq21 143 5e-29 seq27 123 5e-23 seq77 100 6e-16 >seq71 Length=978913 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||||||| ||||||| || ||||| || || || || || |||| Sbjct 433063 TACCACCGCGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAG 433004 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || || ||||||||||| || | |||||| || || | Sbjct 433003 AGAGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGG 432944 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| |||||| || || || ||||| | || | ||| | Sbjct 432943 GGATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCAA 432884 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||| || |||||||| ||||| ||||||||||| || ||||| Sbjct 432883 CTTCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTTACAAAGATTTGCAT 432835 Score = 150 bits (166), Expect = 4e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||||||| ||||||| || ||||| || || || || || |||| Sbjct 432835 TACCACCGCGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAG 432776 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| ||||| || || |||||||| || | |||||| || |||| Sbjct 432775 AGAGAGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAG 432716 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||||||||||||| || || || ||||| | || | ||| | Sbjct 432715 GGATACCTTCTTTATCTTGAATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCGA 432656 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 ||||||| || || |||||||| || | ||||| || || || ||||| ||| Sbjct 432655 CTTCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCATGATT 432603 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||||||| ||||||| || ||||| || || || || || ||||| ||| | | || Sbjct 433506 ACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCC 433447 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| ||||| || ||||||||||| || | |||||| || || || || |||||||| Sbjct 433446 ATCTTCAAGTTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTT 433387 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| |||||| || || || ||||| | || | ||| ||||| | ||| || Sbjct 433386 GTCTTGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCGACTTCGAGAGTAAT 433327 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| ||||| ||||| || ||||| Sbjct 433326 AGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 433291 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | ||| ||||||||||| || || || || || |||| Sbjct 433291 TACCACCACGGAGACGGAGCACAAGGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 433232 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || || ||||||||||| || | |||||| || || | Sbjct 433231 AGAGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGG 433172 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| |||||| || || || ||||| | || | ||| | Sbjct 433171 GGATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCAA 433112 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||| || |||||||| ||||| ||||||||||| || ||||| Sbjct 433111 CTTCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTTACAAAGATTTGCAT 433063 >seq21 Length=571097 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | ||| |||||||||||||| || || || || |||| Sbjct 539641 TACCACCACGGAGACGGAGCACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAG 539700 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || || ||||||||||| || | |||||| || |||| Sbjct 539701 AGAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAG 539760 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||| |||||| || || || ||||| | || | ||| | Sbjct 539761 GGATGCCTTCTTTGTCTTGGATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCAA 539820 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||| || |||||||| |||| ||||| ||||| || ||||| Sbjct 539821 CTTCGAGAGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 539869 Score = 143 bits (158), Expect = 5e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | ||| |||||||||||||| || || || || |||| Sbjct 539869 TACCACCACGGAGACGGAGCACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAG 539928 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || || ||||||||||| || | |||||| || |||| Sbjct 539929 AGAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAG 539988 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || |||||||||||| || || || ||||| | || | ||| | Sbjct 539989 GGATGCCTTCTTTGTCTTGAATCTTTTGCTTGACGTTGTCAATTGAGTCCGAGGATTCAA 540048 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 |||| | ||| || |||||||| |||| ||||| || || || ||||| || Sbjct 540049 CTTCGAGAGTAATAGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCATGAT 540100 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||||| || ||||||||||| || || || ||||| ||| | | || Sbjct 539427 CGAAGGACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCA 539486 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||||||||| || | |||||| || ||||| || ||||| || Sbjct 539487 TCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTG 539546 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| |||||| || || || ||||| | || | ||| ||||| | ||| || Sbjct 539547 TCTTGGATCTTTTGCTTGACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATA 539606 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| ||||| || ||||| Sbjct 539607 GTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 539641 >seq27 Length=1513655 Score = 123 bits (136), Expect = 5e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | || ||||| |||||||| || || || || || ||||| | | || Sbjct 1427437 ACGAAGGACAAGATGGAGAGTGGATTCTTTTTGAATGTTGTAGTCTGATAGGGTACGGCC 1427496 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || ||||| || || ||||| || | | ||||||||| ||||| || |||||||| Sbjct 1427497 ATCCTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCAGGAGGAATGCCTTCCTT 1427556 Query 82715 ATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA 82773 ||||||||||| ||| || |||| ||||| | ||| | || |||||||| || | Sbjct 1427557 GTCTTGAATCTTCTGC-TTGACATGCTCAATGGCATCCGAGGACTCGACTTCCAATGTAA 1427615 Query 82774 TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 | || || || ||||| || || ||||| || ||||| || Sbjct 1427616 TAGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCATGAT 1427655 Score = 109 bits (120), Expect = 1e-18 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | |||||| || ||||||| || ||||| || || || || || || | Sbjct 550397 TACCACCACGGAGACGCAGCACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGG 550338 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||||||||| | ||| || ||||||||||| || | |||||| || |||| Sbjct 550337 ACAAGGTGCGACCGTCTTCCAATTGCTTACCAGCAAAGATCAGACGTTGTTGGTCAGGAG 550278 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCG 82746 | || ||||| || |||||||||||| || ||||| || |||| Sbjct 550277 GAATACCTTCTTTGTCTTGAATCTTTTGCTTGACATTGTCGATCG 550233 >seq77 Length=46662 Score = 100 bits (110), Expect = 6e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||||| || ||||| || || || || ||||| | Sbjct 33858 TACCACCACGGAGACGAAGGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCGG 33799 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||| ||||| | ||| || |||||||| || | | ||| || || |||| Sbjct 33798 AAAGAGTACGACCATCTTCCAATTGCTTACCAGCAAAAATCAAGCGTTGCTGGTCAGGAG 33739 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAAT 82744 | || ||||| || |||||||||||| || ||||| ||||| Sbjct 33738 GAATACCTTCTTTGTCTTGAATCTTTTGCTTGACATTGTCAAT 33696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981825765918646