Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq38 282 4e-71 seq21 114 1e-20 seq71 100 3e-16 seq27 95.1 1e-14 >seq38 Length=1275103 Score = 282 bits (312), Expect = 4e-71 Identities = 1187/1841 (64%), Gaps = 70/1841 (4%) Strand=Plus/Plus Query 147951 GTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGAC 148010 || |||||||||||||| |||||||| || ||| | ||| |||| ||||| || Sbjct 987811 GTACGCAGATAGTACATACCCGTCTTCAGACCCTTCTTCCAGCCGTAAAAGTGCATGGAG 987870 Query 148011 GACATGAGCGTGT--ACGTCGGGTGCGGCACA-AACAGATTAAACGACT--GGCTCTGGT 148065 | || || || | || || || || |||| || | |||| || || | Sbjct 987871 GTCA---GCTTGCCAAAGTTAGGCACGCCAATGAACACGTTGA--GACTTTGGGATTGAT 987925 Query 148066 CAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTC-GCTTTATCTTCATCTCCCAG 148124 | || || || |||||||| || ||||| || ||||| || || || ||||| Sbjct 987926 CGATAAAGGCACCACGGTCGGCAGCCATATCGATGAGGGTGCGTTGGGAG-ATTTCCCAC 987984 Query 148125 GCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCG 148184 | |||||||| | |||| | |||||| ||| | |||| |||| || |||||| Sbjct 987985 ACGGTCTTGTAGATGGCTTTGAGGTTATCGGGGATGTTGGGGATGTGCTGGACAGAGCCG 988044 Query 148185 CGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCA 148244 || | | || | || ||||| || | | | | ||||| | |||||| Sbjct 988045 TTGTCGGACATGATGCGGTTCTTGATTTCATCATTCCAGATGCCAAGCTCCACCAGGTCC 988104 Query 148245 TCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACG 148304 | || ||| | | || | || || || || ||||| || || || || || | Sbjct 988105 TTGAGCAGCCAGGGGTTGGCGACTTGGAATTCACCGGCAAGGACCCGGCGGGTGTAAAGA 988164 Query 148305 TTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTG 148364 ||| || | || || || | |||||| ||| | || || | ||| | || || Sbjct 988165 TTGGATGTGTAGGGCTCGAAGCATTCGTTGAAGCCGAGCATTTGTGAGGTAGAGGCGGTA 988224 Query 148365 GGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGA 148424 |||||| || ||||| ||||||||||||| ||| | || | | || ||| || Sbjct 988225 GGCATGGGGGCGACCAGGAGCGAGTTGCGCACGCCGTGCTTGCTGACTTGTTCCTTGAGG 988284 Query 148425 GCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCG 148484 || |||||||||||||| | || || || | ||||||||||||||| | || || Sbjct 988285 GCGGCCCAGTCCCAGAGGTCGGTAGGAGTGACATCCCACATGTCGTACTGGAAGATACCT 988344 Query 148485 CGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAG 148544 | | ||||| || ||||| | ||| || ||| || | ||||| || Sbjct 988345 TTGGACACAGGGCTTCCTTCGTAGGTTTCGTAAGGACCGAGCTCACGGGCCAGCTCCATT 988404 Query 148545 CTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCC 148604 | || | ||| ||| |||||| || || ||||| | ||| | |||| || Sbjct 988405 GAGGTTTCCATGGCGGCGTGGTAAATAGTTTCAAAGATTTGACGGTTCAACAGCTTGGCT 988464 Query 148605 GACTCGCTTTCGTACGGCATA-CGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCC 148663 || ||| | || ||| |||| | ||| ||| || ||||| || || || || || Sbjct 988465 TCGTCTGATTCAAAGGG-ATAGCGCATCAGCATAAAGGCATCGGCCAGACCTTGGACACC 988523 Query 148664 CACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC---GGATAGTG 148720 | |||||||| ||||| |||||||| || || ||||| || |||| Sbjct 988524 GAGACCAATGGGGCGGTGACGCTTGTTGGAG---CGTTCGGCCTCGATGACAGGGTAGTA 988580 Query 148721 GTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGC--GCAGC 148778 |||| |||||||||||||| || ||||| | ||||| || | | || ||||| Sbjct 988581 GTTGATGTCGATGATCTTGTTCAGGTTGCGGGTAATGACCTTGGTGA--CGGCATGCAGC 988638 Query 148779 ------AATTCAAAATCGTACTTGTCATCTACGATGCATCGGTTC--ACGGCGATAGAGG 148830 || |||||| | || | |||| ||| || | |||||| || Sbjct 988639 TTCTTAAAGTCAAAAGAGG---TGCGGTTGACGA--CATAGGAGGGAAGAGCGATACTGG 988693 Query 148831 CTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGAT 148890 | || ||||||||||| | ||||| ||| | |||||| || || |||| ||||| | Sbjct 988694 CCAGGTTGCACACGGCGATTTCATCAGGGCTGGAGTACTCGACAATTTCGGTACACAGGT 988753 Query 148891 TGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGT 148950 | ||||| ||||| ||| | ||| | ||| ||| |||| |||||| || || || | Sbjct 988754 TACTGCACTTGATGGTGCCGAGGTTTTGTTGGTTGGATTTGCGGTTGCAGGCATCTTTAT 988813 Query 148951 ACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGA---ACCGATGCAGGT 149007 ||||||| | || ||| ||||| || | ||||| ||| ||| ||| | Sbjct 988814 ACAGCATAAAGGGGTTGCCGGTTTCGGTTTGGGCTTCCATGATGGCGTACCA---CAGCT 988870 Query 149008 CCTGCGC---GCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCC 149064 || || | | ||| || | | || || || || ||||| | ||||||| Sbjct 988871 TTTGGGCCTTGATCGTTTG--GCGAGCA-CGGCCTTCTTGTTCGTAGCGGGCATACAGCT 988927 Query 149065 GCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCG 149124 ||||| | ||||| | |||| ||||| ||| | || || || | |||| Sbjct 988928 CTTCGAATTCATCGCCCCATACTTCGTGCAGACCAGGGGCTTCGTTGGGACAGAACAGCG 988987 Query 149125 ACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACA 149184 ||||| |||||| || | ||| |||||||| || ||||| |||||||| ||||| || | Sbjct 988988 ACCACTCGCCGTTGGCTTCCACACGCTTCATGAAGAGATCAGGCACCCACAGCGCATAGA 989047 Query 149185 TGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGA 149244 || || || || | || || ||| | ||| ||| |||| | | | ||| Sbjct 989048 ACAGATCACGGGCACGGATTTCGTCCTTGCCGACGTTCTTGCGAAGGTCCAAAAAGGTGA 989107 Query 149245 ATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGC 149301 | | || |||||||| || || | ||||| || | || || |||||| || | Sbjct 989108 AGACATCGGCGTGCCAAGGTTCCAGGTACATGGCAAAAGCACCGGGACGCTTGTTGCCAC 989167 Query 149302 CCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGG 149361 | || ||||||| ||| | ||||||| || ||||| | ||| || | || ||| Sbjct 989168 CTTGATCGACGTAGCGGGCAGTGTTGTTGAAGACTCGGAGCATGGGCAGGAGACCGTTGG 989227 Query 149362 CAGT-GCCGTTAGTAG-AGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGAC 149419 ||| |||||| || ||| |||| | ||| || || | ||||| | ||||| Sbjct 989228 -AGTAGCCGTTGGTGCCAGC-AATGTAAGAGCCAGTGGCACGGATGTTGTGGATGTTGAG 989285 Query 149420 GCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCC 149479 || |||||||| || ||| ||||| || || ||| || ||||||||| Sbjct 989286 ACCAATGCCGCCAGCGGTCTTGGAGATTTGGGCACAAGACTTGAGGGTTTCGTAGATGCC 989345 Query 149480 CTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGT 149539 ||||| ||| ||||||||||| || ||||||||| ||||||| ||| | |||| Sbjct 989346 TTCGATCGAGTCTTCCTTCATGGTCAAGAGGAAGCACGAGGACATTTGAGGACGAGGCGT 989405 Query 149540 GCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTA 149599 |||||| ||| | || |||||||| || || || | || | ||||| | ||| Sbjct 989406 GCCGGCGTTGAAGAGCGTAGGGCTGGCATGGGTGAAGAAGCGCTCGGACATCAATTGGTA 989465 Query 149600 CGACTC--GAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGC 149657 | || |||| || || ||||| ||||| || || || | ||| || ||||| | | Sbjct 989466 GGTTTCCAAAGCA-GC-ATCGATGTCGTCGCCGTGAATCCCGACGGCCACACGCATGATC 989523 Query 149658 ATATGCTGCGGTCGCTCCGCCACTTTGTTTCCA---ATTTTGAGCAAGTA--GCCGTTTT 149712 | || || || ||||| |||||| || ||| || |||||||| || ||| || Sbjct 989524 AAGTGTTGAGGACGCTCAGCCACT---TTCCCATTGATCTTGAGCAAATAAGACCG--TT 989578 Query 149713 CTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGG 149753 | || || ||| |||||||||| |||||| |||| |||||| Sbjct 989579 CCAGAGTTTTGAAGCCAAAGTAGTTGTAGCCAAAATCGCGG 989619 >seq21 Length=571097 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||||| |||||||| || ||||| || | ||| | | | || ||||| Sbjct 539436 AAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCA-TCTTCGAG 539494 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | ||||| || || ||||| |||||||||||||| ||||| ||| Sbjct 539495 CTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGGAT 539554 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||||||||||| | |||| | ||| | || || || |||| || | || ||||| Sbjct 539555 CTTTTGCTTGACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTGCC 539614 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || || || ||||| Sbjct 539615 AGTCAGGGTCTTGACAAAGATTTGCAT 539641 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || |||||||||||||| || | ||||| || || ||||| |||||||||||||| ||| Sbjct 539943 TCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTG 540002 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||||||||||| | |||| | ||| | || || || |||| || | Sbjct 540003 TCTTGAATCTTTTGCTTGACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATA 540062 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || ||||| ||||| || || ||||| || |||||| Sbjct 540063 GTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCATG 540098 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || |||||||||||||| || | ||||| || || ||||| |||||||||||||| ||| Sbjct 539715 TCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTG 539774 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||||||||||| | |||| | ||| | || || || |||| || | Sbjct 539775 TCTTGGATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATA 539834 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| ||||| || || || || || ||||| Sbjct 539835 GTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 539869 >seq71 Length=978913 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||||| || || || || ||||| || | ||| | | | || || || Sbjct 433040 AAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCA-TCTTCAAG 432982 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | || || || || ||||| || ||||| ||||||||||| ||| Sbjct 432981 CTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGGAT 432922 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||||||||||| | |||| | ||| | || || || |||| || | ||| ||||| Sbjct 432921 CTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATGGTCTTGCC 432862 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||| ||||| || || ||||| Sbjct 432861 AGTCAAAGTCTTTACAAAGATTTGCAT 432835 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| || | || || || || ||||| || ||||| ||||||||| Sbjct 433217 TCTTCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTG 433158 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||||||||||| | |||| | ||| | || || || |||| || | | Sbjct 433157 TCTTGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATG 433098 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| |||| ||| ||||| || || ||||| Sbjct 433097 GTCTTGCCAGTCAAAGTCTTTACAAAGATTTGCAT 433063 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || |||||||| || | || || || || ||||| |||||||| ||||| || Sbjct 432761 TCTTCAAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCTTCTTTA 432702 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||||||||||| | |||| | ||| | || || || || | ||||| | Sbjct 432701 TCTTGAATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCGACTTCCAAGGTGATG 432642 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || ||||| || ||||| || |||||||| |||||| Sbjct 432641 GTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCATG 432606 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || || |||||||| || | || || || || ||||| || ||||| ||||||||| Sbjct 433445 TCTTCAAGTTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTG 433386 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||||||||||| | |||| | ||| | || || || |||| || | Sbjct 433385 TCTTGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCGACTTCGAGAGTAATA 433326 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| |||| || || || || || ||||| Sbjct 433325 GTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 433291 >seq27 Length=1513655 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTGC 133521 ||||| ||||| || || ||||| || || | | ||| ||||| || ||||||| Sbjct 1427456 GTGGATTCTTTTTGAATGTTGTAGTCTG--ATAGGGTACGGCCATCCTCCAGTTGCTTGC 1427513 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || |||| | || || || || ||||| |||||||||||||| ||||| |||| Sbjct 1427514 CGGCAAAAATCAAACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCTTGAATCTTCTGCT 1427573 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| ||||||| | || | || ||| || || | || | ||||| || |||| || Sbjct 1427574 TGACATGCTCAATGGCATCCGAGGACTCGACTTCCAATGTAATAGTTTTTCCAGTCAAAG 1427633 Query 133642 TTTTTACGAAAATCTGCATG 133661 |||| || || || |||||| Sbjct 1427634 TTTTGACAAAGATTTGCATG 1427653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420111125360