Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq38 98.7 2e-15 >seq38 Length=1275103 Score = 98.7 bits (108), Expect = 2e-15 Identities = 551/867 (64%), Gaps = 25/867 (3%) Strand=Plus/Minus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 |||| ||||| ||||||||||| ||||| ||||||| || ||||||| | | Sbjct 989602 ACTACTTTGGCTTCAAAACTCTGGAACGGTCTTATTTGCTCAAGATCAATGGGAAAGTGG 989543 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 ||| |||||||||||| || | | ||||| || | || ||||| || | || || Sbjct 989542 CTGAGCGTCCTCAACACTTGATCATGCGTGTGGCCGTCGGGATTCACGGCGACGACATCG 989483 Query 110422 AAGCTGTTATTGAATGTTATGATGTATTAA-GTAAAAAGAAAGCTATT-----CATGCTA 110475 | |||| | | ||| || | ||| | || || ||| | ||||| | Sbjct 989482 ATGCTGCTTTGGAAACCTACCA---ATTGATGTCC---GAGCGCTTCTTCACCCATGCCA 989429 Query 110476 CTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAG 110535 ||||| || || ||||| || || | | ||| || | || ||||| || | Sbjct 989428 GCCCTACGCTCTTCAACGCCGGCACGCCTCGTCCTCAAATGTCCTCGTGCTTCCTCTTGA 989369 Query 110536 GAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTT 110595 || || || || || || ||||| || || || | || || ||| | || | Sbjct 989368 CCATGAAGGAAGACTCGATCGAAGGCATCTACGAAACCCTCAAGTCTTGTGCCCAAATCT 989309 Query 110596 CTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATA 110655 | || | | |||| || |||||| | || | || | || || | | || | | | Sbjct 989308 CCAAGACCGCTGGCGGCATTGGTCTCAACATCCACAACATCCGTGCCACTGGCTCTTACA 989249 Query 110656 TCGCAA-CAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGAC 110714 | || || | | || | || |||| || || | || ||| | ||||||||||| || Sbjct 989248 TTGCTGGCACCAACGGCTACTCCAAC-GGTCTCCTGCCCATGCTCCGAGTCTTCAACAAC 989190 Query 110715 ACTGCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTC 110771 ||||| || || |||||||||| ||| | || | ||||| || || || Sbjct 989189 ACTGCCCGCTACGTCGATCAAGGTGGCAACAAGCGTCCCGGTGCTTTTGCCATGTACCTG 989130 Query 110772 GAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAA 110831 ||||||||||| | ||| | || || || || ||||| || || || || Sbjct 989129 GAACCTTGGCACGCCGATGTCTTCACCTTTTTGGACCTTCGCAAGAACGTCGGCAAGGAC 989070 Query 110832 GAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGT 110891 ||| | || |||||| | || ||||| ||||| | | ||| | |||||||| ||| Sbjct 989069 GAAATCCGTGCCCGTGATCTGTTCTATGCGCTGTGGGTGCCTGATCTCTTCATGAAGCGT 989010 Query 110892 GTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCG-TTCTCCTGGTCTATCTGA 110950 || ||| || ||| |||||| || | ||||| || || | |||||||| || Sbjct 989009 GTGGAAGCCAACGGCGAGTGGTCGCTGTTCTGTCC-CAACGAAGCCCCTGGTCTGCACGA 988951 Query 110951 TGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCG 111010 |||| || | || || ||||| || || | || ||| |||||||| ||| Sbjct 988950 AGTATGGGGCGATGAATTCGAAGAGCTGTATGCCCGCTACGAACAAGAAGGCCGTGCTCG 988891 Query 111011 -CAAACAAATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACT 111068 ||||| | || | || ||| | || |||| | ||| | ||| | ||| ||||| Sbjct 988890 CCAAACGA--TCAAGGCCCAAAAGCTGTGGTACGCCATCATGGAAGCCCAAACCGAAACC 988833 Query 111069 GG-AACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTT 111127 || ||| |||| ||| ||||||||||| || |||||||| || ||| || | Sbjct 988832 GGCAACCCCTT-TATGCTGTATAAAGATGCCTGCAACCGCAAATCCAACCAACAAAACCT 988774 Query 111128 AGGAACAATTAAGTCTAGTAATTTGTG 111154 || || || |||| ||||| |||| Sbjct 988773 CGGCACCATCAAGTGCAGTAACCTGTG 988747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186811066511554