Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq27 107 1e-18 seq77 93.3 3e-14 >seq27 Length=1513655 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| |||||| |||||||| |||||||| || || Sbjct 1427426 CCACCACGGAGACGAAGGACAAGATGGAGAGTGGATTCTTTTTGAATGTTGTAGTCTGAT 1427485 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| ||| || ||||||||||||||||| || ||||| | || Sbjct 1427486 AGGGTACGGCCATCCTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCAGGAGGA 1427545 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||| ||||| || |||| || | || || || || || Sbjct 1427546 ATGCCTTCCTTGTCTTGAATCTTCTGCTT-GACATGCTCAATGGCATCCGAGGACTCGAC 1427604 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || ||||| || || || ||||| |||||||| ||||| Sbjct 1427605 TTCCAATGTAATAGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCAT 1427652 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/160 (73%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||| || | ||| || ||||| |||||||| ||||| Sbjct 550396 ACCACCACGGAGACGCAGCACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGA 550337 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| |||| |||||||| || || ||||| |||| ||| || || || | || Sbjct 550336 CAAGGTGCGACCGTCTTCCAATTGCTTACCAGCAAAGATCAGACGTTGTTGGTCAGGAGG 550277 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 | |||||||||||| ||| || || || |||| ||| Sbjct 550276 AATACCTTCTTTGTCTTGAATCTTTTGCTT-GACATTGTC 550238 >seq77 Length=46662 Score = 93.3 bits (102), Expect = 3e-14 Identities = 118/161 (73%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || | ||| || ||||| |||||||||||||| Sbjct 33857 ACCACCACGGAGACGAAGGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCGGA 33798 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || |||||||| || || ||||||||||| || ||||| || | || Sbjct 33797 AAGAGTACGACCATCTTCCAATTGCTTACCAGCAAAAATCAAGCGTTGCTGGTCAGGAGG 33738 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCA 33682 | |||||||||||| ||| || || || |||| |||| Sbjct 33737 AATACCTTCTTTGTCTTGAATCTTTTGCTT-GACATTGTCA 33698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703543306880