Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq21 113 1e-19 seq71 98.7 2e-15 seq27 91.5 3e-13 seq77 86.0 1e-11 >seq21 Length=571097 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || || || || || ||| | ||||| ||| || ||| || | || Sbjct 540083 CAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCGGACTCAATTGACAA 540024 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||||||||||| |||||||| || || ||| ||| | || ||||| Sbjct 540023 CGTCAAGCAAAAGATTCAAGACAAAGAAGGCATCCCTCCTGACCAACAACGTCTCATCTT 539964 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || |||||| | |||||||| | ||| | | || |||||| |||| ||||| || Sbjct 539963 TGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAACATCCAAAAAGAATC 539904 Query 206364 TACTCTTCACCTTGT 206378 |||||| |||||||| Sbjct 539903 TACTCTCCACCTTGT 539889 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || || || || || || || ||| | ||||| ||| || ||| Sbjct 539866 CAAATCTTTGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCGGAC 539807 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||||||||||| ||||| |||||||| || || ||| ||| Sbjct 539806 TCTATTGATAACGTCAAGCAAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAACAA 539747 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| | |||||||| | ||| | | || |||||| || Sbjct 539746 CGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAACATC 539687 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || ||||| |||||||| |||||||| Sbjct 539686 CAAAAAGAATCTACTCTCCACCTTGT 539661 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || || || || || || || ||| | ||||| ||| || ||| Sbjct 539638 CAAATCTTTGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCGGAC 539579 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||||||||||| ||||| |||||||| || || ||| ||| Sbjct 539578 TCAATTGACAACGTCAAGCAAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAACAA 539519 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| | |||||||| | ||| | | || |||||| || Sbjct 539518 CGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAACATC 539459 Query 206353 CAGAAAGAGTCTAC 206366 |||||||| || || Sbjct 539458 CAGAAAGAATCCAC 539445 >seq71 Length=978913 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || || || || ||||| |||||||| ||| || ||| | | || Sbjct 432621 CAAGACTCTTACTGGCAAGACCATCACCTTGGAAGTCGAATCCTCGGACTCTATTGATAA 432680 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||||||||||| |||||||| || || ||| ||| | |||||||| Sbjct 432681 CGTCAAGCAAAAGATTCAAGATAAAGAAGGTATCCCTCCTGACCAACAACGTCTTATCTT 432740 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| ||||| | |||||||| | ||| | | || |||||| |||| || || || Sbjct 432741 TGCCGGCAAGCAACTTGAAGATGGCCGTACTCTCTCTGACTACAACATCCAAAAGGAATC 432800 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || | ||| | ||| || | || || Sbjct 432801 CACCTTGCACTTGGTTCTGCGTCTCCG 432827 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/200 (71%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 206180 TTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||| || | || || || || || ||| | ||||| ||| || ||| | | Sbjct 433072 TTTGTAAAGACTTTGACTGGCAAGACCATTACTCTCGAAGTTGAATCCTCGGACTCTATT 433131 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 || || ||||||||||| ||||| || ||||| || || ||| ||| | ||| Sbjct 433132 GACAACGTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCAACAACGCCTT 433191 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 ||||| || || |||||| | |||||||| | ||| | | || |||||| |||| || Sbjct 433192 ATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACTCTCTCTGACTACAACATCCAAAAG 433251 Query 206359 GAGTCTACTCTTCACCTTGT 206378 || |||||||| |||||||| Sbjct 433252 GAATCTACTCTCCACCTTGT 433271 >seq27 Length=1513655 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 206224 AGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCG 206283 || |||||| | |||| || ||||||||||||||||| |||||||| ||| || Sbjct 550223 AGCTCTGACTCGATCGACAATGTCAAGCAAAAGATTCAAGACAAAGAAGGTATTCCTCCT 550282 Query 206284 GACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT 206343 ||| ||| | || ||||| || || ||||| |||||||| || | || ||| |||| Sbjct 550283 GACCAACAACGTCTGATCTTTGCTGGTAAGCAATTGGAAGACGGTCGCACCTTGTCCGAC 550342 Query 206344 TACAACGTCCAGAAAGAGTCTAC 206366 |||||| |||| || || || || Sbjct 550343 TACAACATCCAAAAGGAATCCAC 550365 >seq77 Length=46662 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||||||||||||||||| |||||||| ||| || ||| ||| | | || || Sbjct 33705 GTCAAGCAAAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAGCAACGCTTGATTTTT 33764 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | ||| | ||||||||||| |||| || || || Sbjct 33765 GCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCCGATTACAACATCCAAAAGGAATCC 33824 Query 206365 AC 206366 || Sbjct 33825 AC 33826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181819073802994