Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq38 183 3e-41 seq71 109 5e-19 seq27 102 8e-17 seq21 96.9 3e-15 >seq38 Length=1275103 Score = 183 bits (202), Expect = 3e-41 Identities = 755/1170 (65%), Gaps = 27/1170 (2%) Strand=Plus/Plus Query 147251 AAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGT 147309 |||| ||| |||| |||| |||||||||||||| ||| |||| ||||| || || || Sbjct 988477 AAGGGATAGCGCATCAGCATAAAGGCATCGGCCAGACCTTGGACACCGAGACCAATGGGG 988536 Query 147310 CGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT-ATGGGATAGTGGTTGCGATCAATAAT 147368 || || | |||| ||| |||| |||| | | || |||| |||| || || || Sbjct 988537 CGGTGACGCTTGTTGGAGCG-TTCGGCCTCGATGACAGGGTAGTAGTTGATGTCGATGAT 988595 Query 147369 CTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAG- 147427 |||||| ||||| || | || || || | | | || |||| || ||| ||| Sbjct 988596 CTTGTTCAGGTTGCGGGTAATGACCTTGGTGACGGCATGCAGCTTCTTAAAGTCAAAAGA 988655 Query 147428 --TCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGC 147485 | | || ||||| || | || | |||||| ||||| ||||| ||||| Sbjct 988656 GGTGCGGTTGACGACA--TAGGAG--GGAAGA--GCGATACTGGCCAGGTTGCACACGGC 988709 Query 147486 CGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGAC 147545 | || || | | | ||||| || ||||||| |||||||| ||||| || ||| Sbjct 988710 GATTTCATCAGGGCTGGAGTACTCGACAATTTCGGTACACAGGTTACTGCACTTGATGGT 988769 Query 147546 TCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCC 147605 || | ||||| || ||| ||| || ||||| || ||||| | ||||| | || Sbjct 988770 GCCGAGGTTTTGTTGGTTGGATTTGCGGTTGCAGGCATCTTTATACAGCATAAAGGGGTT 988829 Query 147606 GCCGGTCTCGACTTGCGTTTCAACGATAAACCTATG-CAGGTCCTGCGCTCGCACCCGCT 147664 |||||| ||| ||| | ||| | ||| | || ||| | || || | | | Sbjct 988830 GCCGGTTTCGGTTTGGGCTTCCATGATGG-CGTACCACAGCTTTTGGGCCTTGATCGTTT 988888 Query 147665 GCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGC 147724 | ||| ||||| || | |||||| || | |||| | || || || ||||| | Sbjct 988889 GGCGAGCACGGCCTTCTTGTTCGTAGCGGGCATACAGCTCTTCGAATTCATCGCCCCATA 988948 Query 147725 AATCGGCAAGGCC-GGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTA 147783 ||| || || ||| | | || ||||| | |||||||||| | ||| || | Sbjct 988949 CTTCGTGCAGACCAGGGGCTTCGTTG-GGACAGAACAGCGACCACTCGCCGTTGGCTTCC 989007 Query 147784 ACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAA 147843 || || ||| || ||||| |||||||||||||| || | ||||| || || | Sbjct 989008 ACACGCTTCATGAAGAGATCAGGCACCCACAGCGCATAGAACAGATCACGGGCACGGATT 989067 Query 147844 TCCTCGGCGCCCATGTTGCGTTTCAAA--TTAAGCACGCTATAGATGTCGGCGTGCCAGG 147901 || || ||| | ||| || | || | | | | | ||| ||||||||||| | Sbjct 989068 TCGTCCTTGCCGACGTTC--TTGCGAAGGTCCAAAAAGGTGAAGACATCGGCGTGCCAAG 989125 Query 147902 GTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGACATGGCGCA 147958 |||| | ||| | ||| | ||||| |||||| || || || ||||| | ||| Sbjct 989126 GTTCCAGGTACATGGCAAAAGCACCGGGACGCTTGTTGCCACCTTGATCGACGTAGCGGG 989185 Query 147959 CCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGT-GCCGTTGGTGGAA 148017 | ||||||| || || || | |||||| || ||| | | ||| |||||||||| | Sbjct 989186 CAGTGTTGTTGAAGACTCGGAGCATGGGCAGGAGACCGTTGG-AGTAGCCGTTGGTGCCA 989244 Query 148018 TTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTAC 148077 || | ||| ||| || | | ||| | ||| | ||||||||||| || | Sbjct 989245 GCAATGTAAGAGCCAGTGGCACGGATGTTGTGGATGTTGAGACCAATGCCGCCAGCGGTC 989304 Query 148078 TTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTG 148137 || || || || ||| | || ||||||||| ||||| ||| | || Sbjct 989305 TTGGAGATTTGGGCACAAGACTTGAGGGTTTCGTAGATGCCTTCGATCGAGTCTTCCTTC 989364 Query 148138 ACGC-CAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGT 148196 | | |||| | || ||||| ||||||| ||| |||| || || ||| || || Sbjct 989365 ATGGTCAAG-AGGAAGCACGAGGACATTTGAGGACGAGGCGTGCCGGCGTTGAAGAGCGT 989423 Query 148197 GGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTC 148256 || || || || || || || | ||||| | || || || | ||| | || Sbjct 989424 AGGGCTGGCATGGGTGAAGAAGCGCTCGGACATCAATTGGTAGGTTTCCAAAGCAGCATC 989483 Query 148257 GATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGC 148316 |||||||||||||||||| || | || || ||||||| || ||| || || || || || Sbjct 989484 GATGTCGTCGCCGTGAATCCCGACGGCCACACGCATGATCAAGTGTTGAGGACGCTCAGC 989543 Query 148317 AACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTT 148376 |||| ||||||||||| | ||| ||| || |||||| | |||||||| || Sbjct 989544 CACTTTCCCATTGATCTTGAGCAAATAAGACCGTTCCAGAGTTTTGAAGCCAAAGTAGTT 989603 Query 148377 GTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 ||| ||||||| | || || |||||| Sbjct 989604 GTAGCCAAAATCGCGGTCATAGATGATGGC 989633 >seq71 Length=978913 Score = 109 bits (120), Expect = 5e-19 Identities = 161/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||||| || | | | || || ||||| ||||||||||| | ||||| | Sbjct 432821 CGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCA 432762 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || || || |||| | |||| ||||| ||||| || ||||| || ||||||||| Sbjct 432761 TCTTCAAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCTTCTTTA 432702 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| ||||| || | | || | || || | | || ||||| | || | Sbjct 432701 TCTTGAATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCGACTTCCAAGGTGATG 432642 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACTTATTAGAT 132135 || || ||||| ||||| || | |||||| ||||||| || ||| || Sbjct 432641 GTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCATGA-TTGTTAAAT 432596 >seq27 Length=1513655 Score = 102 bits (112), Expect = 8e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||||||||||||||| | |||||| ||| || || || || |||| | Sbjct 1427459 GATTCTTTTTGAATGTTGTAGTCTGATAGGGTACGGCCATCCTCCAGTTGCTTGCCGGCA 1427518 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || | ||| |||||||| ||||| |||||||| || || ||| || || || | Sbjct 1427519 AAAATCAAACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCTTGAATCTTCTGCTTGACA 1427578 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 || || | | ||| | | ||| ||||| | || | ||||| ||||||| |||||| Sbjct 1427579 TGCTCAATGGCATCCGAGGACTCGACTTCCAATGTAATAGTTTTTCCAGTCAAAGTTTTG 1427638 Query 132110 ATGAAAATCTGCATGA 132125 | || || ||||||| Sbjct 1427639 ACAAAGATTTGCATGA 1427654 >seq21 Length=571097 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||| ||||||||||| | || || |||||||||||| || || | | Sbjct 539904 GATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCA 539963 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| ||||| || ||||| ||||||||||| || ||| ||||| || | Sbjct 539964 AAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGAATCTTTTGCTTGACG 540023 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | | || ||||||| || | || || |||||||| || || Sbjct 540024 TTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTCTTG 540083 Query 132110 ATGAAAATCTGCATGA 132125 | ||| || ||||||| Sbjct 540084 ACGAAGATTTGCATGA 540099 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||| ||||||||||| | || || |||||||||||| || || | | Sbjct 539676 GATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCA 539735 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| ||||| || ||||| ||||||||||| || || ||||| || | Sbjct 539736 AAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTTTGCTTGACG 539795 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | | || ||||||| || | || || |||||||| || || Sbjct 539796 TTATCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTCTTG 539855 Query 132110 ATGAAAATCTGCAT 132123 | || || ||||| Sbjct 539856 ACAAAGATTTGCAT 539869 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | ||||| || | | | || ||||| || ||||||||||| | || Sbjct 539420 ACGGAGGCGAAGGACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGAGT 539479 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||||||||| || || | | |||| ||||| ||||| || ||||| ||||| Sbjct 539480 GCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCC 539539 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || || ||||| || | | || | | || | | || ||||||| Sbjct 539540 TTCTTTGTCTTGGATCTTTTGCTTGACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAG 539599 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || |||||||| || || | || || ||||| Sbjct 539600 AGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 539641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610520829040