Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq27 96.9 3e-15 seq25 82.4 7e-11 >seq27 Length=1513655 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/204 (71%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 25170 ACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAG 25229 ||| ||||||| | ||||| ||||| || || |||||| | || || | |||||||| Sbjct 1427657 ACATCATGCAAATCTTTGTCAAAACTTTGACTGGAAAAACTATTACATTGGAAGTCGAGT 1427598 Query 25230 CCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCG 25289 || ||| | || ||||| || || || || ||| || || || || || || || | Sbjct 1427597 CCTCGGATGCCATTGAGCATGTCAAGCAGAAGATTCAAGACAAGGAAGGCATTCCTCCTG 1427538 Query 25290 ATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGA 25347 |||| ||| | | |||| | |||||| ||||| || |||| | | | |||| | Sbjct 1427537 ATCAACAACGTTTGATTTTTGCCGGCAAGCAACTGGAGGATGGCCGTACCCTATCAG--A 1427480 Query 25348 TTACAATATTCAAAAAGAATCCAC 25371 ||||| ||||||||||||||||| Sbjct 1427479 CTACAACATTCAAAAAGAATCCAC 1427456 >seq25 Length=485700 Score = 82.4 bits (90), Expect = 7e-11 Identities = 120/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 138269 TGCCAGCCGAGAATAGAGTGGGACTAGCGTGGGTAAAC-ATTTTCGAGCGCATCAATCTA 138327 ||||||| ||| || || || | || |||||||| | || |||| |||||| | Sbjct 237259 TGCCAGCGTTGAACAGCGTAGGTGTGGCATGGGTAAAGTACTTGCGAGA-CATCAAGTCA 237201 Query 138328 TATGACTCGATCGCACTCTCGATATCATCACCATGAATCTGAAGAGCGACACGCATCAGC 138387 || | | ||| ||||| |||||||| |||||| || ||| || |||||||| | | Sbjct 237200 TAAGTTTGGATAGCACTATCGATATCGGAACCATGGATACCAAGGGCCACACGCATGATC 237141 Query 138388 ATGTGTTGAGGTCTCTCGACGATAACATTATTGACTCTCAATAAATA 138434 ||||||||||| | |||||| || |||| |||| |||| | ||| Sbjct 237140 ATGTGTTGAGGGCGCTCGACAGTAGCATTGTTGATCTTCAACAGATA 237094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445093765740480