Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq38 185 1e-40 seq56 122 1e-21 seq44 107 3e-17 seq25 100 4e-15 >seq38 Length=1275103 Score = 185 bits (204), Expect = 1e-40 Identities = 213/287 (74%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 259895 ATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGC 259954 ||||| ||| || |||||| || | || |||||||| || ||||||||||| || Sbjct 989456 ATGTCCGAGCGCTTCTTCACCCATGCCAGCCCTACGCTCTTCAACGCCGGCACGCCTCGT 989397 Query 259955 CCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTAT 260014 || || | || |||||||| || ||| |||||||| || |||||||| |||||||| Sbjct 989396 CCTCAAATGTCCTCGTGCTTCCTCTTGACCATGAAGGAAGACTCGATCGAAGGCATCTAC 989337 Query 260015 GACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCA 260074 || || |||||| || || | ||||||||| | || |||||||| ||| | | Sbjct 989336 GAAACCCTCAAGTCTTGTGCCCAAATCTCCAAGACCGCTGGCGGCATTGGTCTCAACATC 989277 Query 260075 CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTT 260134 ||||| | || ||| | ||| | ||| | || |||||||||||| | |||||||| || Sbjct 989276 CACAACATCCGTGCCACTGGCTCTTACATTGCTGGCACCAACGGCTACTCCAACGGTCTC 989217 Query 260135 GTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 |||||||||| || || || ||| |||| || ||||||||||| || Sbjct 989216 CTGCCCATGCTCCGAGTCTTCAACAACACTGCCCGCTACGTCGATCA 989170 >seq56 Length=149020 Score = 122 bits (134), Expect = 1e-21 Identities = 174/244 (71%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| |||| |||||||||||| | ||||| || ||||| || | | ||| Sbjct 85506 TACTCCTCCTACATCTACAAGGTGTTGAAGCAAGTCCACCCTGATACTGGT-----ATC- 85453 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||||||| ||||||| ||| ||||||| |||||||||||||| | || ||||| | | Sbjct 85452 TCCAACAAGGCCATGTCCATCTTGAACTCCTTTGTCAACGACATCTTTGAACGCATTGCC 85393 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || || || |||| || ||||||||| ||| ||| | || || ||| Sbjct 85392 ACTGAAGCTTCCAAGTTGGCTGCCTACAACAAGCGTTCCACCATCTCTTCCCGTGAAATC 85333 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 || || || || || ||||| | | || ||| |||||| |||||||||||| || || Sbjct 85332 CAAACTGCTGTTCGTTTGATCCTCCCTGGTGAATTGGCCAAGCACGCCGTCTCTGAAGGT 85273 Query 725139 ACCA 725142 |||| Sbjct 85272 ACCA 85269 >seq44 Length=282398 Score = 107 bits (118), Expect = 3e-17 Identities = 171/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| |||| ||||||||||| | ||||| || ||||| || | | ||| Sbjct 104706 TACTCCTCCTACATCTACAAGGTCTTGAAGCAAGTCCACCCTGATACTGGT-----ATC- 104759 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||||||||| ||||||| ||| ||||||| || ||||||||||| | || || || | | Sbjct 104760 TCCAACAAGGCCATGTCTATCTTGAACTCTTTCGTCAACGACATCTTTGAACGTATTGCC 104819 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 ||||| || |||| || ||||||||| ||| || | || || ||| Sbjct 104820 ACCGAAGCTTCCAAGTTGGCTGCCTACAACAAGCGTTCCACCATTTCTTCCCGTGAAATC 104879 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 || || || || || ||||| | | || ||| |||||| |||||||||||| || || Sbjct 104880 CAAACTGCTGTTCGTTTGATCCTCCCTGGTGAATTGGCCAAGCACGCCGTCTCTGAAGGT 104939 Query 725139 ACCA 725142 |||| Sbjct 104940 ACCA 104943 >seq25 Length=485700 Score = 100 bits (110), Expect = 4e-15 Identities = 170/244 (70%), Gaps = 8/244 (3%) Strand=Plus/Plus Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATAT 263231 ||| ||||||||||| | ||||||||||||||| | | | ||||||| ||| || || Sbjct 238878 CGACCTCAAGGCTCTTTACAAGACCGTGTGGGAAATCTCTCAACGGGTGATCATCGACAT 238937 Query 263232 GGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGA 263291 ||| ||||| || | | | | |||| ||| ||| || | ||| ||| | | ||| Sbjct 238938 GGCTGCCGATCGTGGTGCTTTTATCGATCAGTCCCAATCCATGAACTTGTTCACTGGCGA 238997 Query 263292 CCCGAC----GGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCA 263347 || || ||| ||| | || || |||||| || || ||| ||||||| Sbjct 238998 GCCTACCTTTGGCA---AGC-TGACCTCCATGCACTTTTACGCCTGGAAAAAGGGCCTCA 239053 Query 263348 AGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCG 263407 |||| ||||||||||| || || | || || |||| | | ||||| |||||||||| | Sbjct 239054 AGACCGGCATGTACTACCTACGATCACGCCCTGCTGTCGATGCCATCAAATTCACCGTTG 239113 Query 263408 ATCA 263411 |||| Sbjct 239114 ATCA 239117 Score = 89.7 bits (98), Expect = 7e-12 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 260000 ATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGC 260059 ||||| ||||||||||| || | | | || || | |||||||| | |||||||| Sbjct 237377 ATCGAAGGCATCTATGATACCTTGATGACCTGTGCCCAGATCTCCAAATCAGCCGGCGGT 237436 Query 260060 ATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGC 260119 | || | || ||| | |||| | | ||| | ||| | || |||||||||||| Sbjct 237437 GTAGGCGTCAGTTTCCAAAAGATCCGCGGCTCTGGCTCGTACATTGCTGGCACCAACGGC 237496 Query 260120 CAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCT 260171 ||||||||| ||||||||||||| || || | ||||||||||| |||| Sbjct 237497 ACCTCCAACGGCATTGTGCCCATGCTGCGTGTGTACAACGACACGGCTCGCT 237548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177800204490468