Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq27 98.7 9e-16 seq77 84.2 2e-11 >seq27 Length=1513655 Score = 98.7 bits (108), Expect = 9e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||| || || || |||||||| |||||||| |||| | Sbjct 550395 CCACCACGGAGACGCAGCACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGAC 550336 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || |||| |||| |||||||| ||||| |||| || || ||||| | |||| Sbjct 550335 AAGGTGCGACCGTCTTCCAATTGCTTACCAGCAAAGATCAGACGTTGTTGGTCAGGAGGA 550276 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTT 35658 | | || ||||| ||||||||||| Sbjct 550275 ATACCTTCTTTGTCTTGAATCTTTTGCTT 550247 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || |||||||||||||| || | | ||| || | || ||||| ||||| || ||||| Sbjct 1427462 TCTTTTTGAATGTTGTAGTCTGATAGGGTACGGCCATCCTCCAGTTGCTTGCCGGCAAAA 1427521 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| || || || || | ||||| || |||||||| ||||| ||||| | | Sbjct 1427522 ATCAAACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCTTGAATCTTCTGCTTGACATGC 1427581 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | | || || || || |||| || || ||||| || ||||||||||| ||| Sbjct 1427582 TCAATGGCATCCGAGGACTCGACTTCCAATGTAATAGTTTTTCCAGTCAAAGTTTTGACA 1427641 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 1427642 AAGATTTGCAT 1427652 >seq77 Length=46662 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| || || || |||||||| ||||||||||||| Sbjct 33856 CCACCACGGAGACGAAGGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCGGAA 33797 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||| |||||||| ||||| ||||| || |||||||| | |||| Sbjct 33796 AGAGTACGACCATCTTCCAATTGCTTACCAGCAAAAATCAAGCGTTGCTGGTCAGGAGGA 33737 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTT 35658 | | || ||||| ||||||||||| Sbjct 33736 ATACCTTCTTTGTCTTGAATCTTTTGCTT 33708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450792957619120