Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq38 150 2e-31 seq34 109 8e-19 >seq38 Length=1275103 Score = 150 bits (166), Expect = 2e-31 Identities = 744/1168 (64%), Gaps = 16/1168 (1%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 || || ||||| || ||||| || ||||| || || || ||||| || || || | Sbjct 988738 ATTTCGGTACACAGGTTACTGCACTTGATGGTGCCGAGGTTTTGTTGGTTGGATTTGCGG 988797 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATA 69444 || ||||| || || || || ||||| || | || ||||| | || | ||| || || Sbjct 988798 TTGCAGGCATCTTTATACAGCATAAAGGGGTTGCCGGTTTCGGTTTGGGCTTCCATGATG 988857 Query 69445 GATTTCCAAACGACCCTAGCATTTAT--TACGGTCTTGTAACGCTTCTCTTTTTCATATT 69502 | | ||| | || || || | || | | | || | |||| ||| || Sbjct 988858 GCGTACCACAGCTTTTGGGCCTTGATCGTTTGG-CGAGCACGGCCT-TCTTGTTCGTAGC 988915 Query 69503 GTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTG 69562 | | ||| ||| |||||||||||| ||||| || || | || ||||| ||| || | Sbjct 988916 GGGCATACAGCTCTTCGAATTCATCGCCCCATACTTCGTGCAGACCAGGGGCTTCGTTGG 988975 Query 69563 GACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCC 69622 |||| | || |||||| | | | | | || || ||||| || ||||| || | || Sbjct 988976 GACAGAACAGCGACCACTCGCCGTTGGCTTCCACACGCTTCATGAAGAGATCAGGCACCC 989035 Query 69623 AAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGA 69681 | || || ||| || ||||| | || | |||| || || || || || ||| Sbjct 989036 ACAGCGC-ATAGAACAGATCACGGGCACGGATTTCGTCCTTGCCGACGTTCTTGCGAAGG 989094 Query 69682 TCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGT 69741 || | ||| | | ||| | ||||| ||||| || || || || | | || || Sbjct 989095 TCCAAAAAGGTGAAGACATCGGCGTGCCAAGGTTCCAGGTACATGGCAAAAGCACCGGGA 989154 Query 69742 CGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGA 69801 || || || || || ||||| | ||| | ||||||||| || |||||| ||||| || Sbjct 989155 CGCTTGTTGCCACCTTGATCGACGTAGCGGGCAGTGTTGTTGAAGACTCGGAGCATGGGC 989214 Query 69802 ATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTA 69861 | | ||| || || | || || || |||| ||| ||| || | || || || || Sbjct 989215 AGGAGACCGTTGGAGTAGCCGTTGGTGCCAGCAATGTAAGAGCCAGTGGCACGGATGTTG 989274 Query 69862 CTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTG 69921 || ||||| || || || || | || |||||| | |||||| || | || Sbjct 989275 TGGATGTTGAGACCAATGCCGCCAGCGGTCTTGGAGATTTGGGCACAAGACTTGAGGGTT 989334 Query 69922 TCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGA 69981 || || || || || || || || ||||| | | || || || ||||||||| Sbjct 989335 TCGTAGATGCCTTCGATCGAGTCTTCCTTCATGGTCAAGAGGAAGCACGAGGACATTTGA 989394 Query 69982 TGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAA 70041 || | || || || || || | ||||| || || ||||| | || || Sbjct 989395 GGACGAGGCGTGCCGGCGTTGAAGAGCGTAGGGCTGGCATGGGTGAAGAAGCGCTCGGAC 989454 Query 70042 AGCAGATTGTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGAC 70100 | || | ||| ||||| | ||| | || || || | | | ||||| || | || || Sbjct 989455 ATCAATTGGTAGGTTTCCAAAGCAGCATCGATGTCGTCGCCG-TGAATCCCGACGGCCAC 989513 Query 70101 ACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGA 70160 |||||| | || || ||||| || || || ||| ||| || || | || || || Sbjct 989514 ACGCATGATCAAGTGTTGAGGACGCTCAGCCACTTTCCCATTGATCTTGAGCAAATAAGA 989573 Query 70161 TTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAAC 70220 |||||||||||| || ||||| |||||||| ||| || | || || || || | Sbjct 989574 CCGTTCCAGAGTTTTGAAGCCAAAGTAGTTGTAGCCAAAATCGCGGTCATAGATGATGGC 989633 Query 70221 AGAATTTAGTTTATCCTTATATTTGGTAACTATATCCATAACAGTAG-GT--GAGATAAT 70277 ||||| || ||| | ||| | || | | || ||| | || ||||| || Sbjct 989634 TGAATTGAGACGATCGGCGTTCTTGATGAC-AACTTGGTA--AGTGGTGTCCGAGATCAT 989690 Query 70278 CGGAGATCGTTTACCATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACT 70337 || || |||| || | || || || | |||| | | || ||||| | || | Sbjct 989691 GGGCGAGTGTTTGCCCGTCTTGGGGTTGATATAGGTATACAAGTCTTCGACGACTTGCGA 989750 Query 70338 AAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGC 70397 || | ||||| ||||| ||||| | || || || || || | ||| || | ||||| Sbjct 989751 GAACACCTTTTTGGTTTCTTTGTGCAGGTTGGAGATAGCAATACGGGCAGCCAAGATAGC 989810 Query 70398 ATAGTCAGGATGTTGTGTAGTACAAGT-AGCTGCTATTTCCGCAGCTAACGTATCTAATT 70456 |||||||||||| ||| | || || ||| || |||| ||||| | | || |||| Sbjct 989811 ATAGTCAGGATG-GGTGGTGGTCATGTAAGCAGCCGTTTCAGCAGCAAGATTGTCCAATT 989869 Query 70457 CTATAGTTGTAACTCCGTTATATAGCCC 70484 | | ||| || || || | ||| | ||| Sbjct 989870 CCACAGTGGTCACACCTTGATACACCCC 989897 >seq34 Length=381833 Score = 109 bits (120), Expect = 8e-19 Identities = 221/322 (69%), Gaps = 7/322 (2%) Strand=Plus/Plus Query 39839 GTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATT 39898 ||||| || |||| ||| | | | |||||| | ||| || | ||| ||||| || Sbjct 50208 GTTTCAATGGCATCAAACAAGTTTTCCTTTTCAGAAGCATCCTTGATATAGGTATCAATC 50267 Query 39899 AACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACAT 39958 | |||||| || |||| | ||||| ||||||||| || || || || || ||||| Sbjct 50268 AGCAGACTGTAAGTTTCGGCGTGGATATTTTCAATCATGATTTGGAAACCATAGAAACAC 50327 Query 39959 CTTGCTTCAGTAATTTGTACCTCTGAACA-AAATCTTTCCGCCAAATTTTCATTCACTAT 40017 | ||||| | ||| | || || | || ||| ||| | |||| |||||||| || || Sbjct 50328 TTGGCTTCGGCAATCTTGACTTC-GTCCATAAAGTTTTGCACCAAGTTTTCATTGACAAT 50386 Query 40018 TCCATCACTAGC-GGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTG 40076 || || | ||| |||||| || || | | ||| ||||| || |||||| | Sbjct 50387 ACCGTC-CGAGCTGGCAAAGAAGGCAAGGATATGCGAGATAAAGTACCGTTCATCCTTGG 50445 Query 40077 TCAATTTATT---CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAA 40133 ||| || || ||| ||| | ||| || || | ||| | ||||||||| ||||| | Sbjct 50446 TCATCTTGTTTTCCCAATCACCAAGATCCTTGGAGAGATCAATTTCTTCAGCAGTCCAGA 50505 Query 40134 ACGACGCCTCTGCCTTTTTGTA 40155 | || ||||| ||||||||||| Sbjct 50506 AGGAGGCCTCGGCCTTTTTGTA 50527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686907821154960