Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq34 118 8e-22 >seq34 Length=381833 Score = 118 bits (130), Expect = 8e-22 Identities = 319/482 (66%), Gaps = 11/482 (2%) Strand=Plus/Minus Query 44117 TCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCG 44176 || |||| ||||| | || || ||||| | ||| ||||| |||||||| || || | Sbjct 50098 TCCTTTGCTGAACGCTTGGTGGCCTTTGCTGCTGTCGAAGGTATTTTCTTCTCGGGCGCC 50039 Query 44177 TTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAAT 44236 ||||| |||| || ||||| ||||| || || ||||||||||| ||||| || || || Sbjct 50038 TTTGCCTCCATCTTCTGGTTGAAGAAGCGGGGCTTGATGCCTGGTTTGACCTTCTCCAAC 49979 Query 44237 GAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGG--AT 44294 || | || | || || |||||| | || ||| ||||| || || | | | | Sbjct 49978 GAACTGATTTGCCGCGACGAAGGCCTCCACACCGACTTTGCCTGTCTGCTGTTCAGCCAC 49919 Query 44295 ATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAA 44354 ||| | || || || | | | || || || || |||| || || || | Sbjct 49918 ATCCATAAG----CAACCCAGC-TCCGAACGTATCACGGAAATCATTGTCGAAGCCGTCA 49864 Query 44355 AGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAAC 44414 |||| ||||||||||| | || || || ||||| || || || ||||||| Sbjct 49863 AGATCGAACAAGAATTCTTAACCGATGCCTTGCCTGTCGCCTTGATTGGCATGAATGCCA 49804 Query 44415 TTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCG 44474 |||||| |||||| ||||||| | |||| || ||| | || | | |||| | Sbjct 49803 CGTTGATGTGCCAATACATTGAATTCGTTGCTGACCGTCTGCTGGTCGCCTTGGGCCAAG 49744 Query 44475 ATAAACACTATATTGTACA-AAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGC 44533 | || || | | || ||||| ||||| |||||||| | ||||| | ||||| Sbjct 49743 AAAAGGTGTACA-AATCCATCAACCCCTTTGACTTTATGGACATGATTTCTCTCCAAGGC 49685 Query 44534 AAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATGATAACA 44593 || || ||||| |||||||| || || || ||||| || || |||||| |||| Sbjct 49684 AAGACCAACTTCTTTGAAAAGCGTGTGTCTGATTATCAACGTGCTGGTGTCATG--AACA 49627 Query 44594 AG 44595 || Sbjct 49626 AG 49625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455447784570