Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq21 123 2e-23 seq71 109 5e-19 seq25 89.7 4e-13 >seq21 Length=571097 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| |||||||| || |||||||| | |||| | ||||||||||| || || Sbjct 539673 GTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCA 539732 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | |||||||| ||||| || || || | || ||||| || |||||| | || Sbjct 539733 GCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTTTGCTTG 539792 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || ||| | || ||||||||| ||||| |||| ||||| ||||| || Sbjct 539793 ACGTTATCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTC 539852 Query 27231 TTCACAAAGATTTGCATA 27248 || ||||||||||||||| Sbjct 539853 TTGACAAAGATTTGCATA 539870 Score = 122 bits (134), Expect = 7e-23 Identities = 171/239 (72%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 27011 ATAATTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATAT 27069 ||||| |||| || || || | || | ||||| || || || || ||||| || || | Sbjct 539404 ATAATCATTGGCCACCACGGAGGCGAAGGACCAAGTGCAAGGTGGATTCTTTCTGGATGT 539463 Query 27070 TGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTT 27129 ||||||| | |||| | ||||||||||| || || || | |||||||| |||| Sbjct 539464 TGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTT 539523 Query 27130 GATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG 27189 | || || || | || ||||| || |||||| | || | | | || | | ||| | Sbjct 539524 GGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTTTGCTTGACGTTGTCAATTGAGTCCG 539583 Query 27190 TGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||||||| ||||| |||| ||||| ||||| || || ||||||||||||||| Sbjct 539584 AGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCATA 539642 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| |||||||| || |||||||| | |||| | ||||||||||| || || Sbjct 539901 GTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCA 539960 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | |||||||| ||||| || || || | || ||||| || ||||| | || Sbjct 539961 GCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGAATCTTTTGCTTG 540020 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | | ||| | || ||||||||| ||||| |||| ||||| ||||| || Sbjct 540021 ACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTC 540080 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||||||||| Sbjct 540081 TTGACGAAGATTTGCAT 540097 >seq71 Length=978913 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | |||| ||||| || || || || || ||||| || |||||||| Sbjct 433061 CCACCGCGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAG 433002 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| ||||| || || || | || || || ||||| || || || Sbjct 433001 AGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGG 432942 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || || || |||||| | || | | | || | || ||| | || ||||||| Sbjct 432941 ATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCAACT 432882 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | ||||| |||| ||| || ||||||||||||||| Sbjct 432881 TCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTTACAAAGATTTGCATA 432834 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || ||||| || |||||||| | |||| | ||||| ||||| || || Sbjct 433259 GTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTGCTTGCCA 433200 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || || ||||| || || || | ||| || || || |||||| | || Sbjct 433199 GCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTG 433140 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || ||| | || ||||||||| ||||| || | ||||| |||| ||| Sbjct 433139 ACGTTGTCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATGGTCTTGCCAGTCAAAGTC 433080 Query 27231 TTCACAAAGATTTGCATA 27248 || ||||||||||||||| Sbjct 433079 TTTACAAAGATTTGCATA 433062 Score = 100 bits (110), Expect = 2e-16 Identities = 164/235 (70%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 27015 TTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTA 27073 |||||| || ||||| | |||| ||||| || || || || || ||||| || ||||| Sbjct 433524 TTATTGACCACCGCGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTA 433465 Query 27074 GTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATC 27133 ||| | | || | ||||| || || || || || | || || || ||||| || Sbjct 433464 GTCAGAGAGAGTACGGCCATCTTCAAGTTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTC 433405 Query 27134 CGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGC 27193 || || | ||| || || || |||||| | || | | | || | || ||| | || Sbjct 433404 AGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGA 433345 Query 27194 TTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| ||||| ||||| |||| ||||| |||| || || ||||||||||||||| Sbjct 433344 TTCGACTTCGAGAGTAATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCATA 433290 >seq25 Length=485700 Score = 89.7 bits (98), Expect = 4e-13 Identities = 173/252 (69%), Gaps = 5/252 (2%) Strand=Plus/Minus Query 131738 AAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGC-GCCTTTGCG 131796 || ||||| || | ||| |||||||||||||||| |||| || || || ||| ||||| Sbjct 237630 AAGAAGTCAAACACATCCACATGCCAGGGTTCCAAGTACA-TGGCAAAGCTGCCGTTGCG 237572 Query 131797 CTTACCG---CCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTC 131853 |||||| || || | ||| ||| || ||| |||||| || |||| ||||||| | Sbjct 237571 TTTACCGCCACCCTGGGTCACAAAGCGAGCCGTGTCGTTGTACACACGCAGCATGGGCAC 237512 Query 131854 CAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTG 131913 | ||||||| | | || ||||||| |||||| |||| | | | ||| || || Sbjct 237511 AATGCCGTTGGAGGTGCCGTTGGTGCCAGCAATGTACGAGCCAGAGCCGCGGATCTTTTG 237452 Query 131914 AACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTT 131973 | ||| || | ||| ||| | |||| ||||| | || || | | | || | Sbjct 237451 GAAACTGACGCCTACACCGCCGGCTGATTTGGAGATCTGGGCACAGGTCATCAAGGTATC 237392 Query 131974 ATAGATACCTTC 131985 |||||| ||||| Sbjct 237391 ATAGATGCCTTC 237380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424933809606768