Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq34 93.3 1e-13 seq38 89.7 2e-12 >seq34 Length=381833 Score = 93.3 bits (102), Expect = 1e-13 Identities = 113/153 (74%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 443715 GTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTG 443774 || || ||||||| |||||||| | || || ||| |||| |||||||||||||| Sbjct 50080 GTGGCCTTTGCTGCTGTCGAAGGTATTTTCTTCTCGGGCGCCTTT-GCCTCCATCTTCTG 50022 Query 443775 GTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGA 443834 |||||| ||||| || | |||| ||| ||||||| ||||||||||| | || || Sbjct 50021 GTTGAAGAAGCGGGGCTTGATGCCTGGTTTGACCTTCTCCAACGAACTGATTTGCCGCGA 49962 Query 443835 CGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 ||| || | || |||||| |||||||| || Sbjct 49961 CGAAGGCCTCCACACCGACTTTGCCTGTCTGCT 49929 >seq38 Length=1275103 Score = 89.7 bits (98), Expect = 2e-12 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 256466 TTTGTGGATCAGTCGCAAAGCCTCAACCTCTACTTTCCGGTGCCCAACTTTAA-ACGCTT 256524 ||| | ||||| || ||||| |||||| | | | || ||||| |||||| | ||| Sbjct 987932 TTTATCGATCAATCCCAAAGTCTCAACGTGTTCATTGGCGTGCCTAACTTTGGCAAGCT- 987874 Query 256525 GACCAACGCACACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCG 256584 |||| | ||||||||||| ||| || || ||||||||||| |||||||| ||||| Sbjct 987873 GACCTCCATGCACTTTTACGGCTGGAAGAAGGGTCTGAAGACGGGTATGTACTATCTGCG 987814 Query 256585 CACCCGACCAGCGGCCGACCCGATCCAATTCACCGT 256620 ||||| || || | ||| | ||| | |||||||| Sbjct 987813 TACCCGTCCTGCCGTCGATGCCATCAAGTTCACCGT 987778 Score = 89.7 bits (98), Expect = 2e-12 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 254897 GGCGGCGTGGGACTCAACATCTCCAACGTGCGCGCCAGCGGCACACCGATTCGCTCG-AC 254955 |||||| | || ||||||||| |||| | || |||| ||| | ||| ||| | || Sbjct 989297 GGCGGCATTGGTCTCAACATCCACAACATCCGTGCCACTGGCTCTTACATT-GCTGGCAC 989239 Query 254956 GAACGGACGGAGCGGCGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTA 255015 ||||| | ||| | | || ||| |||| || ||||||||| || ||||| Sbjct 989238 CAACGGCTACTCCAACGGTCTCCTGCCCATGCTCCGAGTCTTCAACAACACTGCCCGCTA 989179 Query 255016 CGTCGATCAAGGGGGCGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCA 255075 |||||||||||| ||| ||| || || || || || |||| |||||||| || ||||| Sbjct 989178 CGTCGATCAAGGTGGCAACAAGCGTCCCGGTGCTTTTGCCATGTACCTGGAACCTTGGCA 989119 Query 255076 CGCCGA 255081 |||||| Sbjct 989118 CGCCGA 989113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588333680036730