Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq38 188 9e-43 seq56 113 6e-20 seq34 91.5 2e-13 >seq38 Length=1275103 Score = 188 bits (208), Expect = 9e-43 Identities = 877/1375 (64%), Gaps = 34/1375 (2%) Strand=Plus/Plus Query 110719 TGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCAT 110778 |||||| || || |||||||| || || | ||||||| ||| ||||| || ||||| Sbjct 988170 TGTGTAGGGCTCGAAGCATTCGTTGAAGCCGAGCATTTGTGAGGTAGAGGCGGTAGGCAT 988229 Query 110779 TGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATC 110838 || || | || || ||| || | || | || ||| |||||||||| | | Sbjct 988230 GGGGGCGACCAGGAGCGAGTTGCGCACGCCGTGCTTGCTGACTTGTTCCTTGAGGGCGGC 988289 Query 110839 CCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGG 110897 |||||| || | | | || | || | |||||||||| |||| | | |||| || Sbjct 988290 CCAGTCCCAGAGGTCGGTAGGAGTGACAT-CCCACATGTCGTACTGGAAGATACCTTTGG 988348 Query 110898 ACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA---GCCAATTCACAGC 110954 || | || || || ||||||| || | ||| | ||| || |||| || Sbjct 988349 ACACAGGGCTTCCTTCGTAGGTTTCGTAAGGACC--GAGCT-CACGGGCCAGCTCCATTG 988405 Query 110955 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 111014 | |||| || ||||| || || ||||||||||| || |||| | |||||||| Sbjct 988406 AGGTTTCCATGGCGGCGTGGTAAATAGTTTCAAAGATTTGACGGTTCAACAGCTTGGCTT 988465 Query 111015 CATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCA 111074 | ||||| ||||| | ||||| || ||||| |||| || |||||||| ||||| | Sbjct 988466 CGTCTGATTCAAAGGGATAGCGCATCAGCATAAAGGCATCGGCCAGACCTTGGACACCGA 988525 Query 111075 AACCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCTC---AACGGGATAAAAA 111130 |||||| || | ||| ||| | || || | |||| | ||| || || || | Sbjct 988526 GACCAATGGGGCGGTGACGCTTGTTGGAGCGTTCG----GCCTCGATGACAGGGTAGTAG 988581 Query 111131 TTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTT 111190 || |||| |||| ||| || || ||||| | ||| |||| |||| || || Sbjct 988582 TTGATGTCGATGATCTTGTTCAGGTTGCGGGTAATGACCTTGGTGACGGCATGCAGCTTC 988641 Query 111191 TCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAA 111250 | | | ||||||| | | | | || | |||||| ||||| ||||| |||| Sbjct 988642 TTAAAGTCAAAAGAG-GTG-CGGTTGA-CGACATAGGAGGGAAGAGCGATACTGGCCAGG 988698 Query 111251 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAA 111310 ||||| || || | ||||| | |||||| | |||||| ||||| | ||| Sbjct 988699 TTGCACACGGCGATTTCATCAGGGCTGGAGTACTCGACAATTTCGGTACACAGGTTACTG 988758 Query 111311 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGC 111370 | ||| || || || | || | |||||| || |||||| ||||| || || ||| Sbjct 988759 CACTTGATGGTGCCGAGGTTTTGTTGGTTGGATTTGCGGTTGCAGGCATCTTTATACAGC 988818 Query 111371 ATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGC- 111429 || |||| | || || || || || | || | || || | ||| | | ||| Sbjct 988819 ATAAAGGGGTTGCCGGTTTCGGTTTGGGCTTCCATGATGGCGTACCACAGCTTTTGGGCC 988878 Query 111430 -TGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACT 111488 || | ||||| || || || || ||||| | || || |||| || | Sbjct 988879 TTGATCGTTTGGCG--AGCACGGCCTTCTTGTTCGTAGCGGGCATACAGCTCTTCGAATT 988936 Query 111489 CCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGAC 111548 | || ||| | ||| ||||| || || | || |||||||| || ||||| | | Sbjct 988937 CATCGCCCCATACTTCGTGCAGACCAGGGGCTTCGTTGGGACAGAACAGCGACCACTCGC 988996 Query 111549 CACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC 111608 | | || || ||||||||||| || || || | |||||| | | || ||||| | Sbjct 988997 CGTTGGCTTCCACACGCTTCATGAAGAGATCAGGCACCCACAGCGCATAGAACAGATCAC 989056 Query 111609 -TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCC 111667 ||| || || || | || ||| || | || | || | || ||| Sbjct 989057 GGGCACGGA-TTTCGTCCTTGCCGACGTTCTTGCGAAGGTCCAAAAAGGTGAAGACATCG 989115 Query 111668 GCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGA 111721 |||||||| || || || || | || | || || ||||| ||| ||||| Sbjct 989116 GCGTGCCAAGGTTCCAGGTACATGGCAAAAGCACC---GGGACGCTTGTTGCCACCTTGA 989172 Query 111722 TTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGA 111781 | || ||||| || ||| ||| || || || ||||| || | | ||| | || | Sbjct 989173 TCGACGTAGCGGGCAGTGTTGTTGAAGACTCGGAGCATGGGCAGGAGACCGTTGGAGTAG 989232 Query 111782 CCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATA 111841 || || || || ||| ||| | |||| | | | ||||||| | ||||| Sbjct 989233 CCGTTGGTGCCAGCAATGTAAGAGCCAGTGGCACGGATGTTGTGGATGTTGAGACCAATG 989292 Query 111842 CCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATT 111901 || ||||| ||| |||||||| ||||| | | || ||| | ||||| || | ||| Sbjct 989293 CCGCCAGCGGTCTTGGAGATTTGGGCACAAGACTTGAGGGTTTCGTAGATGCCTTCGATC 989352 Query 111902 GAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCA 111961 ||||| ||||| ||| | |||||||| |||||| || || | || || || || Sbjct 989353 GAGTCTTCCTTCATGGTCAAGAGGAAGCACGAGGACATTTGAGGACGAGGCGTGCCGGCG 989412 Query 111962 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCC 112021 |||||||| || || | || || |||| | | | ||||||| | ||| || ||| Sbjct 989413 TTGAAGAGCGTAGGGCTGGCATGGGTGAAGAAGCGCTCGGACATCAATTGGTAGGTTTCC 989472 Query 112022 AAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGT 112076 || ||| ||| ||||| || ||||| || |||| || || ||||||| || || Sbjct 989473 AAAGCAGCATCGATGTCGTCGCCGTGAATCCCGACGGCCACACGCATGATCAAGT 989527 >seq56 Length=149020 Score = 113 bits (124), Expect = 6e-20 Identities = 262/390 (67%), Gaps = 4/390 (1%) Strand=Plus/Minus Query 9160 TCTATCAAGCCTCTTCCTCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 9219 |||| ||||||||| |||| || ||| |||||||| ||| | || ||||| || Sbjct 79085 TCTACCAAGCCTCTACCTCTGAATTGTACGGTAAGGTGGTGGAAACTCCTCAAAAGGAAA 79026 Query 9220 AGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGT-TGCGGCACATTGGCTC 9278 || ||||||||||| || || ||| || || | ||| | | ||| | ||| || Sbjct 79025 CCACTCCCTTCTACCCTCGTTCTCCCTATGGTGTGGCCAAGCTGTACGGTT-ACTGGATC 78967 Query 9279 GTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCAT 9338 || || ||||| || || ||| ||||||| || ||| || || |||||||| Sbjct 78966 GTTGTCAACTACCGTGAATCCTACAACATGTTTGCCTGTAACGGTATTCTGTTCAACCAC 78907 Query 9339 GAATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTACCGAGGGTATCAAACAA 9398 ||||| || | || || |||||| ||| ||||| ||| | || | Sbjct 78906 GAATCTCCCCGCCGTGGCCGTACCTTTGTCACCCGCAAGATCACCCGTGCCGTCGCTGAC 78847 Query 9399 ATC-ATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTG 9457 ||| || || | ||| | | | | | ||||||||||| | || || | ||||| Sbjct 78846 ATCCATTTGGGCCGTCAAGAA-TGCTTGTACTTGGGTAACATCGATGCCAAGCGTGATTG 78788 Query 9458 GGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGA 9517 |||||| || |||||||| |||| ||||||| | ||| | |||||||| |||||||| Sbjct 78787 GGGTCATGCCCGTGACTATGTCGAAGGTATGTGGTTGATGTTGCAACAAGAAGAAGCCGA 78728 Query 9518 CGAATATGTAGTAGCAACGGGTGAGACCCA 9547 || | ||| | || || ||||| ||||| Sbjct 78727 TGACTTTGTCTTGGCCACCGGTGAAACCCA 78698 >seq34 Length=381833 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || |||||| || || || ||| |||| ||||| || |||||| | ||| Sbjct 49937 GGCAAAGTCGGTGTGGAGGCCTTCGTCGCGGCAAATCAGTTCGTTGGAGAAGGTCAAACC 49996 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||| | ||||||||||||||||| | || | | || | || |||||||| || Sbjct 49997 AGGCATCAAGCCCCGCTTCTTCAACCAGAAGATGGAGGCAAAGGCGCCCGAGAAGAAAAT 50056 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAG 122820 ||| || ||| ||||| || | | |||||| || |||||| Sbjct 50057 ACCTTCGACAGCAGCAAAGGCCACCAAGCGTTCAGCAAAGGAG 50099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031105054400