Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq38 260 2e-64 seq25 104 3e-17 seq34 100 4e-16 >seq38 Length=1275103 Score = 260 bits (288), Expect = 2e-64 Identities = 1114/1739 (64%), Gaps = 36/1739 (2%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || || |||||||| |||||||| || |||| ||||||| | || | ||||| |||| | Sbjct 987814 CGCAGATAGTACATACCCGTCTTCAGACCCTTCTTCCAGCCGTAAAAGTGCATGGAGGTC 987873 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | |||| | | | || | ||||| | ||| | |||||||||||||||||| ||| Sbjct 987874 AGCTTGCCAAAGTTAGGCACGCCAATGAACACGTTGAGACTTTGGGATTGATCGATAAAG 987933 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACA-TCCTTCATCTTGATTTCCCACACAGTCCT 118015 || || || || |||||||| || | | | | |||||||||||| ||| | Sbjct 987934 GCACCACGGTCGGCAGCCATATCGATGAGGGTGCGTTGGGA-GATTTCCCACACGGTCTT 987992 Query 118016 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCAC---CCGC 118072 ||||| | || | | ||| ||||| | ||| | |||| || || | | Sbjct 987993 GTAGATGGCTTTGAGGTTATCGGGGATGTTGGGGATGTGCTGGACAGAGCCGTTGTCGGA 988052 Query 118073 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCAC 118132 | ||| || | | ||| || || | ||||| |||| || || |||| | Sbjct 988053 CATGA---TGCGGTTCTTGATTTCATCATTCCAGATGCCAAGCTCCACCAGGTCCTTGAG 988109 Query 118133 GAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGT 118192 || ||| | || || ||||| || ||| || | || | ||||| Sbjct 988110 CAGCCAGGGGTTGGCGACTTGGAATTCACCGGCAAGGACCCGGCGGGTGTAAAGATTGGA 988169 Query 118193 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 118252 ||||| ||||| ||||| || ||| || | ||||| | || ||||| || ||||| Sbjct 988170 TGTGTAGGGCTCGAAGCATTCGTTGAAGCCGAGCATTTGTGAGGTAGAGGCGGTAGGCAT 988229 Query 118253 GGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTC 118312 ||| || | || || ||| || | || | | || | |||||||||| ||| | Sbjct 988230 GGGGGCGACCAGGAGCGAGTTGCGCACGCCGTGCTTGCTGACTTGTTCCTTGAGGGCGGC 988289 Query 118313 CCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGA 118372 |||||| || | | | | | |||||| || |||||| |||||||| ||| Sbjct 988290 CCAGTCCCAGAGGTCGGTAGGAGTGACATCCCACATGTCGTACTGGAAGATACCTTTGGA 988349 Query 118373 CGCTGGCGATCCCTCAAATGTCTCATATGGGCC---CTCAACCTCC-GC-CAATTCGGAG 118427 | | || ||| || | || || || || || |||| || || | ||| ||| Sbjct 988350 CACAGGGCTTCCTTCGTAGGTTTCGTAAGGACCGAGCTCACGGGCCAGCTCCATT--GAG 988407 Query 118428 CTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCC 118487 | || | ||| ||||| || || |||||||| || || |||| |||||| Sbjct 988408 GTTTCC---ATGGCGGCGTGGTAAATAGTTTCAAAGATTTGACGGTTCAACAGCTTGGCT 988464 Query 118488 TCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAAATACATCCGCGAGACCTTGGACACC 118546 ||||| || ||||| | || ||| || ||||| |||| || |||||||||||||| Sbjct 988465 TCGTCTGATTCAAAGG-GATAGCGCATCAGCATAAAGGCATCGGCCAGACCTTGGACACC 988523 Query 118547 GAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACG---GGATAAAA 118603 ||| ||||| ||||| || | | | || || || ||| ||| | | || || | Sbjct 988524 GAGACCAATGGGGCGGTGACGCTTGTTGGAG---CGTTCGGCCTCGATGACAGGGTAGTA 988580 Query 118604 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 118663 || | ||||| | | | || || || ||| | ||||| |||| |||| ||||| Sbjct 988581 GTTGATGTCGATGATCTTGTTCAGGTTGCGGGTAATGACCTTGGTGACGGCATGCAGCTT 988640 Query 118664 TTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAG 118723 | | |||||| | | | | || | |||||| ||||| ||||| ||||| Sbjct 988641 CTTAAAGTCAAAAGAG-GTG-CGGTTGAC-GACATAGGAGGGAAGAGCGATACTGGCCAG 988697 Query 118724 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGA 118783 || ||||| | | | ||||| | |||||| | |||||| || |||| ||| Sbjct 988698 GTTGCACACGGCGATTTCATCAGGGCTGGAGTACTCGACAATTTCGGTACACAGGTTACT 988757 Query 118784 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAG 118843 | ||| |||||||| | ||| | ||| || || || ||| || ||||| || || || Sbjct 988758 GCACTTGATGGTGCCGAGGTTTTGTTGGTTGGATTTGCGGTTGCAGGCATCTTTATACAG 988817 Query 118844 CATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAG 118902 ||| | || | || || || ||||||| | | || || | ||| | | | | Sbjct 988818 CATAAAGGGGTTGCCGGTTTCGGTTTGGGCTTCCATGATGGCGTACCACAGCTTTTGGGC 988877 Query 118903 CTGGCACAGT-GGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAAC 118961 || | | | |||| || || || |||| ||||| | || || |||| || Sbjct 988878 CTTGATCGTTTGGCGA--GCACGGCCTTCTTGTTCGTAGCGGGCATACAGCTCTTCGAAT 988935 Query 118962 TCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGA 119021 || || ||| | || || || || || | | || ||||| || ||||| | Sbjct 988936 TCATCGCCCCATACTTCGTGCAGACCAGGGGCTTCGTTGGGACAGAACAGCGACCACTCG 988995 Query 119022 CCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCC 119081 || | || || |||||||||||||| || || | ||| ||||| |||| ||||| Sbjct 988996 CCGTTGGCTTCCACACGCTTCATGAAGAGATCAGGCACCCACAGCGCATAGAACAGATCA 989055 Query 119082 CGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCC 119141 || || ||| || | || || || | ||||||||| | || ||| Sbjct 989056 CGGGCACGGATTTCGTCCTTGCCGACGTTCTTGCGAAGGTCCAAAAAGGTGAAGACATCG 989115 Query 119142 GCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA---CCAGCCTGGTTT 119198 |||||||| ||||||||||||| || | | || ||| ||| | || | Sbjct 989116 GCGTGCCAAGGTTCCAGGTACATGGCAAAAGCACCGGGACGCTTGTTGCCACCTTGATCG 989175 Query 119199 ACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCA 119258 || || | |||||| ||| || || || ||||| || | || ||| | ||| | ||| Sbjct 989176 ACGTAGCGGGCAGTGTTGTTGAAGACTCGGAGCATGGGCAGGAGACCGTTGGAGTAGCCG 989235 Query 119259 TTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCC 119318 || || || ||| ||| | |||| | || | |||||||| | |||||| || Sbjct 989236 TTGGTGCCAGCAATGTAAGAGCCAGTGGCACGGATGTTGTGGATGTTGAGACCAATGCCG 989295 Query 119319 CCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAG 119378 || || ||| |||||||| || || | |||| | ||||||| || ||||||||| Sbjct 989296 CCAGCGGTCTTGGAGATTTGGGCACAAGACTTGAGGGTTTCGTAGATGCCTTCGATCGAG 989355 Query 119379 TCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTG 119438 || |||| | | | ||||||||| ||||||||||| | || || || |||||| Sbjct 989356 TCTTCCTTCATGGTCAAGAGGAAGCACGAGGACATTTGAGGACGAGGCGTGCCGGCGTTG 989415 Query 119439 AAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAG 119498 ||||| || || | || ||| |||| | | | ||||||| | |||||| ||||| Sbjct 989416 AAGAGCGTAGGGCTGGCATGGGTGAAGAAGCGCTCGGACATCAATTGGTAGGTTTCCAAA 989475 Query 119499 ACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 | || ||||| || |||||||| |||| | || ||||| | || || ||| || Sbjct 989476 GCAGCATCGATGTCGTCGCCGTGAATCCCGACGGCCACACGCATGATCAAGTGTTGAGG 989534 >seq25 Length=485700 Score = 104 bits (114), Expect = 3e-17 Identities = 142/192 (74%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 117833 TGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGA 117892 |||||| ||||||||||| || |||||||| |||| |||||||| || | ||||| || Sbjct 239079 TGATCGTAGGTAGTACATGCCGGTCTTGAGGCCCTTTTTCCAGGCGTAAAAGTGCATGGA 239020 Query 117893 GGACAACTTGGAGAGGGTTGGACTTTCCA-TGAAGAGGTTCATACTTTGGGATTGATCGA 117951 || || |||| | ||| || || ||| |||| | |||||| |||||| ||||||| Sbjct 239019 GGTCAGCTTGCCAAAGGTAGG-CTCGCCAGTGAACAAGTTCATGGATTGGGACTGATCGA 238961 Query 117952 TGAAGCGTCCCCGATCCGCCGCCATATCAATCA-CATCC-TTCATCTTGATTTCCCACAC 118009 | || || ||||| || ||||| || || | || || || | |||||||||||| Sbjct 238960 TAAAAGCACCACGATCGGCAGCCATGTCGATGATCACCCGTTGA--GAGATTTCCCACAC 238903 Query 118010 AGTCCTGTAGAG 118021 ||| |||| || Sbjct 238902 GGTCTTGTAAAG 238891 Score = 82.4 bits (90), Expect = 9e-11 Identities = 162/239 (68%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 119001 GGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATC 119060 ||||||||||||||||| ||| | || || || |||||||| ||||| |||||| Sbjct 237753 GGGCAGAAGAGAGACCAGGTGCCATTGGCTTCGACACGTTTCATGAACAGGTCAGGGATC 237694 Query 119061 CAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAAC 119120 |||||| || ||| || || || || |||||| | ||| || |||| Sbjct 237693 CAGAGCCCCAGGAACAGGTCACGTGCACGCAGTTCTTCCTTGCCCGAGTTCTTGCGCAGG 237634 Query 119121 TCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTA 119180 ||||| ||||| | | |||| | ||||| ||||||| ||||| || | || || Sbjct 237633 TCCAAGAAGTCAAACACATCCACATGCCAGGGTTCCAAGTACATGGCAAAGCTGCCGTTG 237574 Query 119181 CG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGG 119236 || || ||| ||||| | ||| | | || ||| |||| | ||||| ||||| || Sbjct 237573 CGTTTACCGCCACCCTGGGTCACAAAGCGAGCCGTGTCGTTGTACACACGCAGCATGGG 237515 >seq34 Length=381833 Score = 100 bits (110), Expect = 4e-16 Identities = 120/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || |||||| || ||||| ||| | || ||||| || |||||| || ||| Sbjct 49937 GGCAAAGTCGGTGTGGAGGCCTTCGTCGCGGCAAATCAGTTCGTTGGAGAAGGTCAAACC 49996 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||| | |||||||||||||||||||| || | ||| | ||| |||||||| || Sbjct 49997 AGGCATCAAGCCCCGCTTCTTCAACCAGAAGATGGAGGCAAAGGCGCCCGAGAAGAAAAT 50056 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG 130177 || || ||| || || || | | || |||||||||||| Sbjct 50057 ACCTTCGACAGCAGCAAAGGCCACCAAGCGTTCAGCAAAGGAG 50099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434318729840