Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq38 196 5e-45 seq24 131 2e-25 seq25 118 1e-21 seq56 100 3e-16 seq58 95.1 1e-14 >seq38 Length=1275103 Score = 196 bits (216), Expect = 5e-45 Identities = 409/605 (68%), Gaps = 6/605 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC-ACGCGTGTCCGTGAGACGTAC 53251 ||||||| || ||| | || || ||||| |||||| | | || | | || || ||| Sbjct 989521 TCATGCGTGTGGCCGTCGGGATTCACGGCGACGACATCGATGCTGCTTTG-GAAACCTAC 989463 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 | || ||| | | | ||| || || |||| || || || |||||||| || ||| Sbjct 989462 CAATTGATGTCCGAGCGCTTCTTCACCCATGCCAGCCCTACGCTCTTCAACGCCGGCACG 989403 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 || ||||| ||||| |||||||| || | |||||||| ||||||||||| ||| Sbjct 989402 CCTCGTCCTCAAATGTCCTCGTGCTTCCTCTTGACCATGAAGGAAGACTCGATCGAAGGC 989343 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 |||||||| || |||||| |||||||| ||||||||| | || || || ||| || Sbjct 989342 ATCTACGAAACCCTCAAGTCTTGTGCCCAAATCTCCAAGACCGCTGGCGGCATTGGTCTC 989283 Query 53432 CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491 || | ||| ||||||| | ||| | || || || |||||| | || | Sbjct 989282 AACATCCACAACATCCGTGCCACTGGCTCTTACATTGCTGGCACCAACGGCTACTCCAAC 989223 Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551 || || |||| |||||||| |||||||||||||| ||||| |||||| | || ||||| Sbjct 989222 GGTCTCCTGCCCATGCTCCGAGTCTTCAACAACACTGCCCGCTACGTCGATCAAGGTGGC 989163 Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 ||||| || | || ||||| ||||| || || ||||||||||| | | Sbjct 989162 AACAAGCGTCCCGGTGCTTTTGCCATGTACCTGGAACCTTGGCACGCCGATGTCTTCACC 989103 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACA 53671 ||| | || || || ||| || | || || || || |||||| ||||| Sbjct 989102 TTTTTGGACCTTCGCAAGAACGTCGGCAAGGACGAAATCCGTGCCCGTGATCTGTTCTAT 989043 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAG--GACGAGGAGTGGTACC 53729 || |||||| | || || ||||||||| || ||| |||| ||| ||||||| | Sbjct 989042 GCGCTGTGGGTGCCTGATCTCTTCATG--AAGCGTGTGGAAGCCAACGGCGAGTGGTCGC 988985 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 || | || || ||||| ||| || || || | || | || || || || | ||| Sbjct 988984 TGTTCTGTCCCAACGAAGCCCCTGGTCTGCACGAAGTATGGGGCGATGAATTCGAAGAGC 988925 Query 53790 TGTAT 53794 ||||| Sbjct 988924 TGTAT 988920 Score = 132 bits (146), Expect = 5e-26 Identities = 309/458 (67%), Gaps = 15/458 (3%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| || || || || || ||||| ||||| || || | || || | Sbjct 988259 GGCGTGCGCAACTCGCTCCTGGTCGCCCCCATGCCTACCGCCTCTACCTCACAAATGCTC 988200 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 ||| |||||| |||||||| ||||| |||| | ||| |||||| ||| || Sbjct 988199 GGCTTCAACGAATGCTTCGAGCCCTACACATCCAATCTTTACACCCGCCGGGTCCTTGCC 988140 Query 55598 GGTGAGTTTGTCATGATCAACAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAG 55654 ||||| || || | || ||| | | || ||||||||||| | || | || Sbjct 988139 GGTGAATTC--CAAG-TCGCCAACCCCTGGCTGCTCAAGGACCTGGTGGAGCTTGGCATC 988083 Query 55655 TGGAACCCGCAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGG 55712 ||||| | ||||||| || || ||| || || || || |||||| | | Sbjct 988082 TGGAATGATGAAATCAAGAACCGCATCATGTCCG--ACAACGGCTCTGTCCAGCACATCC 988025 Query 55713 ---AGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGA 55769 | || || ||||| | || ||| ||| |||||||| || | || | Sbjct 988024 CCAACATCCCCGATAACCTCAAAGCCATCTACAAGACCGTGTGGGAAATCTCCCAACGCA 987965 Query 55770 GTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACA 55829 || || || ||| ||| || |||||||| | ||||| || ||||| ||| ||| Sbjct 987964 CCCTCATCGATATGGCTGCCGACCGTGGTGCCTTTATCGATCAATCCCAAAGTCTCAACG 987905 Query 55830 TCTTCATGGAGAATCCTTCACTG-GCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAG 55888 | ||||| | | | | | ||| | |||| ||| ||| |||||||||||||| |||||| Sbjct 987904 TGTTCATTG-GCGTGCCTAACTTTGGCAAGCTGACCTCCATGCACTTTTACGGCTGGAAG 987846 Query 55889 AAGGGACTCAAGACGGGTATGTACTATCTGCGGACCCG 55926 ||||| || ||||||||||||||||||||||| ||||| Sbjct 987845 AAGGGTCTGAAGACGGGTATGTACTATCTGCGTACCCG 987808 Score = 111 bits (122), Expect = 2e-19 Identities = 118/153 (77%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 55775 ATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTC 55834 || |||||| ||| || |||||||| | ||||| || ||||| ||| ||| | ||| Sbjct 899835 ATCGACATGGCTGCCGACCGTGGTGCCTTTATCGATCAATCCCAAAGTCTCAACGTGTTC 899894 Query 55835 ATGGAGAATCCTTCACTG-GCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGG 55893 || | | | | | ||| | |||| ||| ||| |||||||||||||| ||||||||||| Sbjct 899895 ATCG-GCGTGCCTAACTTTGGCAAGCTGACCTCCATGCACTTTTACGGTTGGAAGAAGGG 899953 Query 55894 ACTCAAGACGGGTATGTACTATCTGCGGACCCG 55926 || ||||||||||| ||||||||| | ||||| Sbjct 899954 TCTGAAGACGGGTATCTACTATCTGAGTACCCG 899986 >seq24 Length=527347 Score = 131 bits (144), Expect = 2e-25 Identities = 354/534 (66%), Gaps = 11/534 (2%) Strand=Plus/Minus Query 124507 TGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACT-GCTGCAACATAAGC 124565 |||| || || || ||| | | || ||||| ||||| || || |||| | ||| | | Sbjct 63472 TGTGGGTTTCGCCTGTGGCCAAGACAAAATCCTCGGGT-TCATCTTGCTGTAGCATCAAC 63414 Query 124566 CACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCG 124625 |||||| ||| |||||| || ||| || ||||| ||||||| ||| || | || || Sbjct 63413 CACATGCCTTCGACGTAATCGCGTGCATGGCCCCAATCGCGCTGGGCGTCGATATTGCCA 63354 Query 124626 AGCTCGA----TTGGCTTGGCCGTCTTGTTCCACTCCGCCAAACCCA-GTGTAATCTTGC 124680 || | | || |||||| | | | | || | | | || |||| ||||| | Sbjct 63353 AGGTACAAGCATT--CTTGGCGGCCCAAGTGGATGTCGGCGACCGCACGTGTGATCTTTC 63296 Query 124681 GCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACG 124740 | || ||||| ||||||||| |||||||| |||||||| || ||| | || | Sbjct 63295 GGGTGACAAAAGTACGACCGCGTCGAGGCGACTCGTGATTGAACAGGATCCCATTGCAGG 63236 Query 124741 CAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCTTGGACA 124800 ||||||| ||| |||||||||||||| |||||| | ||| | ||||||| || Sbjct 63235 CAAACATGTTGTATGACTCGCGGTAGTTGACAACGATCCAAAAGCCATACAGCTTGGCCA 63176 Query 124801 CGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGGTAGGTTGCTGAATCT 124860 |||||||||| || |||||||| || ||| |||| || || | | || | || Sbjct 63175 CGCCATAGGGCGAGCGAGGGTAGAAGGGAGTGGTTTCCTTCTGAGGCGTTTCGACCACCT 63116 Query 124861 TCCCAAACATCTCCGAAGTACCCGCCTGATAGAATTTGAATTTTGAAATAGAATTCGTTT 124920 | || ||| ||||| || || || ||||| | | | || || | Sbjct 63115 TGCCGTACAGTTCCGAGGTTGAAGCTTGGTAGAA-GCGCACACGGTCTGCCAAGCCGCAT 63057 Query 124921 G-ACGAATTGCCTCCAAGATCCGAAGGGTTCCCATGGCGTCCACATTGGCGGTATACTCG 124979 | |||||| || || | | ||| | ||| || | | |||| || | | | || || ||| Sbjct 63056 GTACGAATGGCATCTAGCAGCCGCAAGGTGCCAAGGCCGTCGACGTCGCCTGTGTATTCG 62997 Query 124980 GGCTGATCAAAAGACAGTTTCACATGGGACTGGGCACCTAGGTTGTACACCTCG 125033 | | ||||| |||| || |||||||| || || | ||||||||||| ||| Sbjct 62996 GACATGTCAAAGGACACCTTGACATGGGATTGCGCCGCAAGGTTGTACACTTCG 62943 >seq25 Length=485700 Score = 118 bits (130), Expect = 1e-21 Identities = 147/196 (75%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC-TGATTGACATGAG 55785 ||||||| ||||| ||| |||||||| || | || | | || | || |||||| Sbjct 238882 CTCAAGGCTCTTTACAAGACCGTGTGGGAAATCTCTCA-ACGGGTGATCATCGACATGGC 238940 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCA-TGGAGAATC 55844 ||| ||||||||||| | ||||| |||||||| || ||||| | |||| ||| | | | Sbjct 238941 TGCCGATCGTGGTGCTTTTATCGATCAGTCCCAATCCATGAACTTGTTCACTGGCG-AGC 238999 Query 55845 CTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGG 55904 || | | | |||| ||| ||| ||||||||||||| ||||| ||||| |||||||| | Sbjct 239000 CTACCTTTGGCAAGCTGACCTCCATGCACTTTTACGCCTGGAAAAAGGGCCTCAAGACCG 239059 Query 55905 GTATGTACTATCTGCG 55920 | |||||||| || || Sbjct 239060 GCATGTACTACCTACG 239075 Score = 87.8 bits (96), Expect = 2e-12 Identities = 168/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 || || |||||| | || | || || ||||| ||||| || || | |||| ||||||| Sbjct 237485 GGCACCAACGGCACCTCCAACGGCATTGTGCCCATGCTGCGTGTGTACAACGACACGGCT 237544 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 || | || | ||||||||| || || ||||| || || ||||| ||| | || || Sbjct 237545 CGCTTTGTGACCCAGGGTGGCGGTAAACGCAACGGCAGCTTTGCCATGTACTTGGAACCC 237604 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 ||||| | || | | || || | || ||||| ||| ||| | ||||| || Sbjct 237605 TGGCATGTGGATGTGTTTGACTTCTTGGACCTGCGCAAGAACTCGGGCAAGGAAGAACTG 237664 Query 53651 CGCTGC-CGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGA 53709 || ||| ||||||||||| | || ||||| || ||||| |||||| ||| ||| Sbjct 237665 CG-TGCACGTGACCTGTTCCTGGGGCTCTGGATCCCTGACCTGTTCATG--AAACGTGTC 237721 Query 53710 GAAG 53713 |||| Sbjct 237722 GAAG 237725 >seq56 Length=149020 Score = 100 bits (110), Expect = 3e-16 Identities = 264/396 (67%), Gaps = 13/396 (3%) Strand=Plus/Plus Query 124507 TGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACT-GCTGCAACATAAGC 124565 |||| || ||||| ||| | | || || || |||| || || | |||||||| | | Sbjct 78696 TGTGGGTTTCACCGGTGGCCAAGACAAAGTCATCGGCT-TCTTCTTGTTGCAACATCAAC 78754 Query 124566 CACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCG 124625 ||||| ||| ||| ||||| || || ||||| || ||||||||||| | ||| || Sbjct 78755 CACATACCTTCGACATAGTCACGGGCATGACCCCAATCACGCTTGGCATCGATGTTACCC 78814 Query 124626 AGCTCGA----TTGGCTTGGCCGTCTTGTTCCAC-TCCGCCAAACCCAGTGTAATCTTGC 124680 | | | || |||| | | | | | || || | | | || ||||||| Sbjct 78815 AAGTACAAGCATT--CTTGACGGCCCAAATGGATGTCAGCGACGGCACGGGTGATCTTGC 78872 Query 124681 GCGTCACAAACT--CGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACA 124738 | || ||||| ||| || || || ||| ||||||||||||||||| || |||| Sbjct 78873 GGGTGACAAAGGTACGG--CCACGGCGGGGAGATTCGTGGTTGAACAGAATACCGTTACA 78930 Query 124739 CGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCCAAAGAGCTTGGA 124798 |||||||| ||| || || |||||||| ||||| || || | ||||||| Sbjct 78931 GGCAAACATGTTGTAGGATTCACGGTAGTTGACAACGATCCAGTAACCGTACAGCTTGGC 78990 Query 124799 CACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGGTAGGTTGCTGAAT 124858 ||| |||||||| || |||||||| || ||| |||| ||||| | || || | | Sbjct 78991 CACACCATAGGGAGAACGAGGGTAGAAGGGAGTGGTTTCCTTTTGAGGAGTTTCCACCAC 79050 Query 124859 CTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAA 124894 ||| || ||| || || ||| || || ||||| Sbjct 79051 CTTACCGTACAATTCAGAGGTAGAGGCTTGGTAGAA 79086 >seq58 Length=142724 Score = 95.1 bits (104), Expect = 1e-14 Identities = 203/300 (68%), Gaps = 4/300 (1%) Strand=Plus/Minus Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081 |||||||||||||| || || | ||| || ||| | || || || | | || || || Sbjct 111983 CAAACGCGTGAAGAGATAACGAGGGCTTGCAGCAGCTTTACCTCCGTCGTGGCGTGTACC 111924 Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 |||||| ||||| || | | ||||| | |||||| ||||||| | | ||| |||| Sbjct 111923 AAACTGACCAGATGGTACCAAAAGGTTAACATTGTTGCTGCCCACGTAGTCCTGGGCCAT 111864 Query 152142 ATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTG-CTCC-GCG 152199 || | | || | || ||| || |||||||||||||| || || |||| || Sbjct 111863 GTTAATGACAGTAGCAGCCACACTGGCCTCACCGTGGTGATA--ATGTGTGACTCCAGCT 111806 Query 152200 ATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCG 152259 | ||| || | ||| || |||||||| ||||| | || ||||| ||| | Sbjct 111805 ACGTAATTAGCAAGCTGGGCAACCTTCATTTCCGTGTTGCGGCCACGCTTGATACACCCA 111746 Query 152260 TAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319 | | |||||||| ||| ||||| || |||||||||| |||||| || ||| || Sbjct 111745 AAGAAGACCTTGCGTTGGCCAGGTTTAAATCCGTCCACCATTGAAGGAATTGAGCGCATG 111686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215220217200