Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq27 111 1e-19 seq71 102 5e-17 >seq27 Length=1513655 Score = 111 bits (122), Expect = 1e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | |||||||||| || ||||||||||| || ||||| || || || Sbjct 1427435 AGACGAAGGACAAGATGGAGAGTGGATTCTTTTTGAATGTTGTAGTCTGATAGGGTACGG 1427494 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || ||||| || |||||||| || ||||| ||||| || || || | || ||| Sbjct 1427495 CCATCCTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCAGGAGGAATGCCTTCC 1427554 Query 34609 TTGTCTGTGATCTTTTGTTTTA-ACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||||| || || | | | | ||| | || | ||| ||||||| || Sbjct 1427555 TTGTCTTGAATCTTCTGCTTGACATGCT-CAATGGCATCCGAGGACTCGACTTCCAATGT 1427613 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || ||||| || || || ||||| ||||| || |||||| || Sbjct 1427614 AATAGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCATGATG 1427656 >seq71 Length=978913 Score = 102 bits (112), Expect = 5e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || | ||| |||||||| ||||| || || || || || || Sbjct 432824 AGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGG 432765 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || |||||||| || | ||| |||||||| || || | || || Sbjct 432764 CCATCTTCAAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCTTCT 432705 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| |||||||| || ||| || ||| | ||| | || ||||||| ||| Sbjct 432704 TTATCTTGAATCTTTTG-CTTGACGTTATCAATAGAGTCCGAGGATTCGACTTCCAAGGT 432646 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || | || || || ||||| |||||| Sbjct 432645 GATGGTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCATG 432606 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || | ||| |||||||| ||||| || || || || || || Sbjct 433508 AGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGG 433449 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||| || || ||||| || | || |||||||| || || | || ||| Sbjct 433448 CCATCTTCAAGTTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCC 433389 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||||||||| || ||| | ||| | ||| | || ||||| | || Sbjct 433388 TTGTCTTGGATCTTTTG-CTTGACGTTGTCAATAGAGTCCGAGGATTCGACTTCGAGAGT 433330 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || || ||||| || ||||| Sbjct 433329 AATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 433291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729162722562