Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq21 145 7e-30 seq27 143 2e-29 seq77 127 2e-24 >seq21 Length=571097 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || ||||| |||||| |||||||||| ||||| ||| | || Sbjct 539641 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCG 539582 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || || || ||| Sbjct 539581 GACTCAATTGACAACGTCAAGCAAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAA 539522 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || ||||| || | ||||| | || | || || |||||| Sbjct 539521 CAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAAC 539462 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || || || || ||||| || ||||| | || | || |||||| Sbjct 539461 ATCCAGAAAGAATCCACCTTGCACTTGGTCCTTCGCCTCCGTGGTGGC 539414 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || || || ||||| |||||| |||||||||| ||||| ||| | || Sbjct 540098 CATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTC 540039 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||| ||||| | ||||| ||||| |||||||||||||||||||| || || || || Sbjct 540038 GGACTCAATTGACAACGTCAAGCAAAAGATTCAAGACAAAGAAGGCATCCCTCCTGACCA 539979 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||| | || | || ||||| || | ||||| | || | || || ||||| Sbjct 539978 ACAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAA 539919 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||| || || || | || | || | ||| | || ||||| || Sbjct 539918 CATCCAAAAAGAATCTACTCTCCACCTTGTGCTCCGTCTCCGTGGTGGTAT 539868 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || ||||| |||||| |||||||||| ||||| ||| | || Sbjct 539869 ATGCAAATCTTTGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCG 539810 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || || || ||| Sbjct 539809 GACTCTATTGATAACGTCAAGCAAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAA 539750 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || ||||| || | ||||| | || | || || |||||| Sbjct 539749 CAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAAC 539690 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| || || || | || | || | ||| | || ||||| || Sbjct 539689 ATCCAAAAAGAATCTACTCTCCACCTTGTGCTCCGTCTCCGTGGTGGTAT 539640 >seq27 Length=1513655 Score = 143 bits (158), Expect = 2e-29 Identities = 182/249 (73%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 26970 ttttttA-ATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTAC 27028 ||||||| || ||| |||||| || ||||| |||||| |||| || || ||||||| Sbjct 1427671 TTTTTTACATCGCTACATCATGCAAATCTTTGTCAAAACTTTGACTGGAAAAACTATTAC 1427612 Query 27029 TCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGA 27088 | ||||| || | || || | |||||| ||||| || || ||||||||||| || Sbjct 1427611 ATTGGAAGTCGAGTCCTCGGATGCCATTGAGCATGTCAAGCAGAAGATTCAAGACAAGGA 1427552 Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 |||||| || || |||||||| ||||| || | |||||||| ||| |||| || | Sbjct 1427551 AGGCATTCCTCCTGATCAACAACGTTTGATTTTTGCCGGCAAGCAACTGGAGGATGGCCG 1427492 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 ||| | || || |||||||||||||| || || || | ||| | || | ||| | || Sbjct 1427491 TACCCTATCAGACTACAACATTCAAAAAGAATCCACTCTCCATCTTGTCCTTCGTCTCCG 1427432 Query 27209 GGGTGGCAT 27217 |||||||| Sbjct 1427431 TGGTGGCAT 1427423 Score = 136 bits (150), Expect = 3e-27 Identities = 134/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || |||||||| || | ||||| ||||| ||||||||||||||||| || || || || Sbjct 550226 TCTGACTCGATCGACAATGTCAAGCAAAAGATTCAAGACAAAGAAGGTATTCCTCCTGAC 550285 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 ||||| ||| | || | || || || |||||||||||| || ||| | ||||| ||| Sbjct 550286 CAACAACGTCTGATCTTTGCTGGTAAGCAATTGGAAGACGGTCGCACCTTGTCCGACTAC 550345 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || ||||| || ||||| ||||| | || ||||| || Sbjct 550346 AACATCCAAAAGGAATCCACCTTGCACTTGGTGCTGCGTCTCCGTGGTGGTAT 550398 >seq77 Length=46662 Score = 127 bits (140), Expect = 2e-24 Identities = 132/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || ||||| ||||| | ||||| ||||| ||||||||||||||||| || || || || Sbjct 33687 TCTGACTCCATTGACAATGTCAAGCAAAAGATTCAAGACAAAGAAGGTATTCCTCCTGAC 33746 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || || || || || | || || || ||||||||||| || || ||||||||||| Sbjct 33747 CAGCAACGCTTGATTTTTGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCCGATTAC 33806 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || ||||| || ||||| | ||| | || ||||| || Sbjct 33807 AACATCCAAAAGGAATCCACCTTGCACTTGGTCCTTCGTCTCCGTGGTGGTAT 33859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917780241280