Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq27 114 9e-21 seq77 104 2e-17 seq71 89.7 4e-13 >seq27 Length=1513655 Score = 114 bits (126), Expect = 9e-21 Identities = 125/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 27852 CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCA 27911 |||| ||||| ||||| ||||| || |||||||||||| |||| || || || Sbjct 550233 CGATCGACAAT--GTCAAGCAAAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAACA 550290 Query 27912 ACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACAT 27971 ||| | || ||||| || || |||||||| |||| |||| ||||||||| |||||||| Sbjct 550291 ACGTCTGATCTTTGCTGGTAAGCAATTGGAAGACGGTCGCACCTTGTCCGACTACAACAT 550350 Query 27972 CCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| || ||| ||||| ||||| ||||| | ||||| || Sbjct 550351 CCAAAAGGAATCCACCTTGCACTTGGTGCTGCGTCTCCGTGGTGG 550395 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| |||||| | ||||| ||| ||||||| | || ||||| | | Sbjct 1427652 ATGCAAATCTTTGTCAAAACTTTGACTGGAAAAACTATTACATTGGAAGTCGAGTCCTCG 1427593 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | || ||||| || || || ||||| ||||| |||| || | Sbjct 1427592 GATGCCATTGAGCAT--GTCAAGCAGAAGATTCAAGACAAGGAAGGCATTCCTCCTGATC 1427535 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || ||||||||||| || ||| |||| || | || | | | || || |||| Sbjct 1427534 AACAACGTTTGATTTTTGCCGGCAAGCAACTGGAGGATGGCCGTACCCTATCAGACTACA 1427475 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||| |||||||| |||| | ||| | || | ||| | ||||| ||| Sbjct 1427474 ACATTCAAAAAGAATCCACTCTCCATCTTGTCCTTCGTCTCCGTGGTGGC 1427425 >seq77 Length=46662 Score = 104 bits (114), Expect = 2e-17 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 27858 ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTT 27917 ||||| ||||| ||||| || |||||||||||| |||| || |||||||| || Sbjct 33700 ACAAT--GTCAAGCAAAAGATTCAAGACAAAGAAGGTATTCCTCCTGACCAGCAACGCTT 33757 Query 27918 AATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAA 27977 |||||||| || || |||||||| || | || | | |||||||||||||||||||| Sbjct 33758 GATTTTTGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCCGATTACAACATCCAAAA 33817 Query 27978 AGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||| ||||| ||||| | ||| | ||||| || Sbjct 33818 GGAATCCACCTTGCACTTGGTCCTTCGTCTCCGTGGTGG 33856 >seq71 Length=978913 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || || ||||||||||| || || || | || |||||| | | Sbjct 432607 ATGCAAATTTTCGTCAAGACTCTTACTGGCAAGACCATCACCTTGGAAGTCGAATCCTCG 432666 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | | ||||| ||||| || || ||||||||| | || || || Sbjct 432667 GACTCTATTGATAACGTCAAGCAAAAGATTCAAGATAAAGAAGGTATCCCTCCTGACCAA 432726 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| | || |||||||| || ||| | || || | || | | || || |||||| Sbjct 432727 CAACGTCTTATCTTTGCCGGCAAGCAACTTGAAGATGGCCGTACTCTCTCTGACTACAAC 432786 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| ||||| |||||| ||||| | || || || Sbjct 432787 ATCCAAAAGGAATCCACCTTGCACTTGGTTCTGCGTCTCCGCGGTGG 432833 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || | ||||| || |||||| | || |||||| | | Sbjct 433291 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAGACTATTACTCTCGAAGTCGAATCCTCG 433350 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | |||| ||||| ||||| || ||||| |||||| | || || | Sbjct 433351 GACTCTATTGACAAC--GTCAAGCAAAAGATCCAAGACAAGGAAGGTATCCCCCCTGACC 433408 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| | || ||||| || || ||| | || || | || | | || || |||| Sbjct 433409 AACAACGCCTTATCTTTGCTGGCAAGCAACTTGAAGATGGCCGTACTCTCTCTGACTACA 433468 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || ||| ||||| |||||| ||||| | || || || Sbjct 433469 ACATCCAAAAGGAATCCACCTTGCACTTGGTTCTGCGTCTCCGCGGTGG 433517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355861905573678