Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq71 197 3e-45 seq21 188 2e-42 seq27 140 8e-28 seq77 136 9e-27 >seq71 Length=978913 Score = 197 bits (218), Expect = 3e-45 Identities = 171/212 (81%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| ||||| || || ||||||||||| || || | || || | |||||| Sbjct 433274 AGCACAAGGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 433215 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||||||||||||||||||||| || | ||||||||||| Sbjct 433214 TCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCT 433155 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||||| || ||||| || || | ||| ||| |||||| |||||||| || ||| Sbjct 433154 TGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATGGTC 433095 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | |||||||||||| | ||||| Sbjct 433094 TTGCCAGTCAAAGTCTTTACAAAGATTTGCAT 433063 Score = 185 bits (204), Expect = 2e-41 Identities = 159/197 (81%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| || ||||||||||| || || | || || | |||||||| ||||||||||| Sbjct 433031 GTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTGCTTGCCA 432972 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||||||||||||||||||||| || | ||||||||||| ||||||||||| || Sbjct 432971 GCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTG 432912 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| || || | ||| ||| |||||| |||||||| || ||||| || || | |||| Sbjct 432911 ACGTTGTCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATGGTCTTGCCAGTCAAAGTC 432852 Query 211098 TTTACAAACACCTGCAT 211114 |||||||| | ||||| Sbjct 432851 TTTACAAAGATTTGCAT 432835 Score = 167 bits (184), Expect = 5e-36 Identities = 155/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| || ||||||||||| || || | || || | |||||||| || |||||||| Sbjct 433487 GTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCAAGTTGCTTGCCA 433428 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||||||||||||||||||||| || | ||||||||||| ||||||||||| || Sbjct 433427 GCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTG 433368 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| || || | ||| ||| ||| || |||||||| || ||||| || || | ||| Sbjct 433367 ACGTTGTCAATAGAGTCCGAGGATTCGACTTCGAGAGTAATAGTCTTGCCAGTCAAGGTC 433308 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | ||||| Sbjct 433307 TTGACAAAGATTTGCAT 433291 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| || ||||||||||| || || | || || | |||||||| || |||||||| Sbjct 432803 GTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCAAGTTGCTTGCCG 432744 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || |||||||| ||||||||||||||||| | ||||| || || || |||||||| || Sbjct 432743 GCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCTTCTTTATCTTGAATCTTTTGCTTG 432684 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| || || | ||| ||| ||| || || | ||||| ||||| || || |||||| Sbjct 432683 ACGTTATCAATAGAGTCCGAGGATTCGACTTCCAAGGTGATGGTCTTGCCAGTAAGAGTC 432624 Query 211098 TTTACAAACACCTGCAT 211114 || || || | ||||| Sbjct 432623 TTGACGAAAATTTGCAT 432607 >seq21 Length=571097 Score = 188 bits (208), Expect = 2e-42 Identities = 169/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| ||||| || |||||||||||||| || || | || || | |||||| Sbjct 539658 AGCACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 539717 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || ||||||||||||||||| | ||||| ||||| Sbjct 539718 TCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCT 539777 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||||| || ||||| || || | ||| ||| |||||| |||||||| || ||| Sbjct 539778 TGGATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATAGTC 539837 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | ||||| Sbjct 539838 TTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 539869 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| ||||| || |||||||||||||| || || | || || | |||||| Sbjct 539886 AGCACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 539945 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || ||||||||||||||||| | ||||| ||||| Sbjct 539946 TCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCT 540005 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||||| || ||||| || || | ||| ||| |||||| |||||||| || ||| Sbjct 540006 TGAATCTTTTGCTTGACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTC 540065 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | ||||| Sbjct 540066 TTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 540097 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| | ||||| ||||| |||||||| || || | || || | |||||| Sbjct 539430 AGGACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 539489 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || ||||||||||||||||| | ||||| ||||| Sbjct 539490 TCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCT 539549 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||||| || ||||| || || | ||| ||| |||||| |||||||| || ||| Sbjct 539550 TGGATCTTTTGCTTGACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTC 539609 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | ||||| Sbjct 539610 TTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 539641 >seq27 Length=1513655 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || |||||||| |||||||| ||||| || || | ||||| | ||||| Sbjct 1427441 AGGACAAGATGGAGAGTGGATTCTTTTTGAATGTTGTAGTCTGATAGGGTACGGCCATCC 1427500 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| |||||||| || || || | |||||||| |||||||||| ||||||||||| Sbjct 1427501 TCCAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCT 1427560 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || | || |||| || ||| || || || | || || || Sbjct 1427561 TGAATCTTCTGCTTGACATGCTCAATGGCATCCGAGGACTCGACTTCCAATGTAATAGTT 1427620 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | ||| || ||||| | ||||| Sbjct 1427621 TTTCCAGTCAAAGTTTTGACAAAGATTTGCAT 1427652 Score = 127 bits (140), Expect = 5e-24 Identities = 146/195 (75%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 210866 TTCAAGAAGGGGTTAGCTAATATTTCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTC 210925 |||||| |||| || | | ||| | ||| || | || || | ||| | ||||| || Sbjct 550416 TTCAAGGAGGG-TTCGATGATACCACCACGGAGACGCAGCACCAAGTGCAAGGTGGATTC 550358 Query 210926 TTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGAT 210985 ||||||||||| || || | | ||| | || ||||||| ||||| || || ||||| Sbjct 550357 CTTTTGGATGTTGTAGTCGGACAAGGTGCGACCGTCTTCCAATTGCTTACCAGCAAAGAT 550298 Query 210986 AAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTC 211045 || ||||||||||||||||||| ||||| ||||| || |||||||| || || || || Sbjct 550297 CAGACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGAATCTTTTGCTTGACATTGTC 550238 Query 211046 GATGGTGTCAGAGCT 211060 ||| | ||||||||| Sbjct 550237 GATCGAGTCAGAGCT 550223 >seq77 Length=46662 Score = 136 bits (150), Expect = 9e-27 Identities = 148/195 (76%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 210866 TTCAAGAAGGGGTTAGCTAATATTTCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTC 210925 |||||| |||| || | | ||| | ||| || | ||||| | ||| | ||||| || Sbjct 33877 TTCAAGGAGGG-TTCGATGATACCACCACGGAGACGAAGGACCAAGTGCAAGGTGGATTC 33819 Query 210926 TTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGAT 210985 ||||||||||| ||||| | ||| || | |||||||||| ||||| || || || || Sbjct 33818 CTTTTGGATGTTGTAATCGGAAAGAGTACGACCATCTTCCAATTGCTTACCAGCAAAAAT 33759 Query 210986 AAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTC 211045 | |||||| ||||||||||||| ||||| ||||| || |||||||| || || || || Sbjct 33758 CAAGCGTTGCTGGTCAGGAGGAATACCTTCTTTGTCTTGAATCTTTTGCTTGACATTGTC 33699 Query 211046 GATGGTGTCAGAGCT 211060 |||| ||||||||| Sbjct 33698 AATGGAGTCAGAGCT 33684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150306913610