Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq71 188 2e-42 seq21 167 6e-36 seq27 143 6e-29 seq77 123 6e-23 >seq71 Length=978913 Score = 188 bits (208), Expect = 2e-42 Identities = 169/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||||||||| ||||| ||||||| ||||| || | | ||| | |||||| Sbjct 433274 AGCACAAGGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 433215 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| |||||||| ||||||||||| || || ||||||||||||||| Sbjct 433214 TCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCT 433155 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||||||||| || || || | ||| |||| ||| || || | || || ||| Sbjct 433154 TGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATGGTC 433095 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| |||| || | |||||| Sbjct 433094 TTGCCAGTCAAAGTCTTTACAAAGATTTGCAT 433063 Score = 174 bits (192), Expect = 4e-38 Identities = 171/221 (77%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || | ||| | |||||||| ||||||| ||||| || | | ||| Sbjct 433055 CGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTG 432996 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||||||| ||||| |||||||| ||||||||||| || || |||||| Sbjct 432995 CGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCT 432936 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||||||||| || || || | ||| |||| ||| || || | Sbjct 432935 TCCTTGTCTTGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCAACTTCGAGA 432876 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| |||||||| |||| || | |||||| Sbjct 432875 GTAATGGTCTTGCCAGTCAAAGTCTTTACAAAGATTTGCAT 432835 Score = 159 bits (176), Expect = 8e-34 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || | ||| | |||||||| ||||||| ||||| || | | ||| Sbjct 433511 CGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTA 433452 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| || ||||| ||||| |||||||| ||||||||||| || || |||||| Sbjct 433451 CGGCCATCTTCAAGTTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCT 433392 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||||||||| || || || | ||| |||| ||| || || | Sbjct 433391 TCCTTGTCTTGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCGACTTCGAGA 433332 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||||||| ||||| || || | || | |||||| Sbjct 433331 GTAATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 433291 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || | ||| | |||||||| ||||||| ||||| || | | ||| Sbjct 432827 CGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTA 432768 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| || ||||| || || |||||||| ||||||||||| || || |||||| Sbjct 432767 CGGCCATCTTCAAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCT 432708 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || || ||||| ||||||||||| || || || | ||| |||| ||| || || || Sbjct 432707 TCTTTATCTTGAATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCGACTTCCAAG 432648 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | ||| || | ||| | |||||| Sbjct 432647 GTGATGGTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCAT 432607 >seq21 Length=571097 Score = 167 bits (184), Expect = 6e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||||||||| ||||||||||||| ||||| || | | ||| | |||||| Sbjct 539658 AGCACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 539717 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || ||||||||||| || || || ||||| |||||| Sbjct 539718 TCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCT 539777 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||||||||| || || || | ||| |||| ||| || || | || || ||| Sbjct 539778 TGGATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATAGTC 539837 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | || | |||||| Sbjct 539838 TTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 539869 Score = 167 bits (184), Expect = 6e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||||||||| ||||||||||||| ||||| || | | ||| | |||||| Sbjct 539886 AGCACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 539945 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || ||||||||||| || || || ||||| |||||| Sbjct 539946 TCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCT 540005 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||||||||| || || || | ||| |||| ||| || || | || || ||| Sbjct 540006 TGAATCTTTTGCTTGACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTC 540065 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | |||||| Sbjct 540066 TTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 540097 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| | ||||||||||| |||| ||||| || | | ||| | |||||| Sbjct 539430 AGGACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 539489 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || ||||||||||| || || || ||||| |||||| Sbjct 539490 TCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCT 539549 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||||||||| || || || | ||| |||| ||| || || | || || ||| Sbjct 539550 TGGATCTTTTGCTTGACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTC 539609 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | || | |||||| Sbjct 539610 TTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 539641 >seq27 Length=1513655 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| |||||||||||||||||||| | ||||| || | | || | ||||| Sbjct 1427441 AGGACAAGATGGAGAGTGGATTCTTTTTGAATGTTGTAGTCTGATAGGGTACGGCCATCC 1427500 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || || || || | |||||||| || || ||||| |||||||||||| Sbjct 1427501 TCCAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCT 1427560 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||||| ||| || |||| || |||| || || || || || || || Sbjct 1427561 TGAATCTTCTGCTTGACATGCTCAATGGCATCCGAGGACTCGACTTCCAATGTAATAGTT 1427620 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||||||||| | || | |||||| Sbjct 1427621 TTTCCAGTCAAAGTTTTGACAAAGATTTGCAT 1427652 Score = 132 bits (146), Expect = 1e-25 Identities = 129/166 (78%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | ||| | |||||||| ||||||| ||||| |||| ||| || Sbjct 550390 ACGGAGACGCAGCACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGACAAGGT 550331 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| | ||||| ||||| ||||| || ||||||||||| || |||||||| Sbjct 550330 GCGACCGTCTTCCAATTGCTTACCAGCAAAGATCAGACGTTGTTGGTCAGGAGGAATACC 550271 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAG 225657 ||| |||||||| ||||||||||| ||| ||||| | ||| ||| Sbjct 550270 TTCTTTGTCTTGAATCTTTTGCTTGACATTGTCGATCGAGTCAGAG 550225 >seq77 Length=46662 Score = 123 bits (136), Expect = 6e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| | |||||||| ||||||| |||||||||| | ||| | |||||| Sbjct 33841 AGGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAATCGGAAAGAGTACGACCATCT 33782 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| ||||| || || | ||||| ||||| || ||||||||||| |||||| Sbjct 33781 TCCAATTGCTTACCAGCAAAAATCAAGCGTTGCTGGTCAGGAGGAATACCTTCTTTGTCT 33722 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAG 225657 || ||||||||||| ||| || |||| ||| ||| Sbjct 33721 TGAATCTTTTGCTTGACATTGTCAATGGAGTCAGAG 33686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192529458159116