Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq21 134 3e-26 seq71 125 2e-23 seq27 104 5e-17 >seq21 Length=571097 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| ||||| || |||||||| ||||||||||||||||| || | | ||| | Sbjct 539879 GAGACGGAGCACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCG 539938 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || || || ||||| || | || ||||| | | ||| ||||| Sbjct 539939 GCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTC 539998 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || |||||||| ||||| ||||| | || | ||| || || ||||| ||||| Sbjct 539999 TTTGTCTTGAATCTTTTGCTTGACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGT 540058 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||| ||||| || || ||||| ||||||| ||||| Sbjct 540059 AATAGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 540097 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| ||||| || |||||||| ||||||||||||||||| || | | ||| | Sbjct 539651 GAGACGGAGCACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAGAGAGTGCG 539710 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || || || ||||| || | || ||||| | | ||| ||||| Sbjct 539711 GCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTC 539770 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || ||||| || ||||| ||||| | || | ||| || || ||||| ||||| Sbjct 539771 TTTGTCTTGGATCTTTTGCTTGACGTTATCAATAGAGTCCGAGGATTCAACTTCGAGAGT 539830 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||| ||||| || || ||||| || |||| ||||| Sbjct 539831 AATAGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 539869 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || ||||| ||||||||||| || | | ||| | |||||||| || || || Sbjct 539445 GTGGATTCTTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCGAGCTGCTTGCCA 539504 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| || | || ||||| | | ||| ||||| || ||||| || ||||| ||| Sbjct 539505 GCAAAGATGAGACGTTGTTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCTTTTGCTTG 539564 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || | || | ||| || || ||||| ||||||||||| ||||| || || ||| Sbjct 539565 ACGTTGTCAATTGAGTCCGAGGATTCAACTTCGAGAGTAATAGTCTTGCCAGTCAGGGTC 539624 Query 152088 TTCACGAAGACCTGCAT 152104 || || |||| ||||| Sbjct 539625 TTGACAAAGATTTGCAT 539641 >seq71 Length=978913 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| ||||| || |||||||| || |||||||||||||| || | | ||| | Sbjct 433281 GAGACGGAGCACAAGGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCG 433222 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || || || |||||||| | || ||||| | | ||| ||||| Sbjct 433221 GCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTC 433162 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || ||||| ||||| | || | ||| || || ||||| ||||| Sbjct 433161 CTTGTCTTGGATCTTTTGCTTGACGTTGTCAATAGAGTCCGAGGATTCAACTTCGAGAGT 433102 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || ||||| || | |||||| || |||| ||||| Sbjct 433101 AATGGTCTTGCCAGTCAAAGTCTTTACAAAGATTTGCAT 433063 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || || |||||||||||||| || | | ||| | |||||||| || || || Sbjct 433031 GTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCAAGCTGCTTGCCA 432972 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || |||||||| | || ||||| | | ||| |||||||| ||||| || ||||| ||| Sbjct 432971 GCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTG 432912 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || | || | ||| || || ||||| |||||||| || ||||| || | |||| Sbjct 432911 ACGTTGTCAATAGAGTCCGAGGATTCAACTTCGAGAGTAATGGTCTTGCCAGTCAAAGTC 432852 Query 152088 TTCACGAAGACCTGCAT 152104 || || |||| ||||| Sbjct 432851 TTTACAAAGATTTGCAT 432835 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || || |||||||||||||| || | | ||| | |||||||| || || || Sbjct 433487 GTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCAAGTTGCTTGCCA 433428 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || |||||||| | || ||||| | | ||| |||||||| ||||| || ||||| ||| Sbjct 433427 GCAAAGATAAGGCGTTGTTGGTCAGGGGGGATACCTTCCTTGTCTTGGATCTTTTGCTTG 433368 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || | || | ||| || || ||||| ||||||||||| ||||| || | ||| Sbjct 433367 ACGTTGTCAATAGAGTCCGAGGATTCGACTTCGAGAGTAATAGTCTTGCCAGTCAAGGTC 433308 Query 152088 TTCACGAAGACCTGCAT 152104 || || |||| ||||| Sbjct 433307 TTGACAAAGATTTGCAT 433291 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || || |||||||||||||| || | | ||| | |||||||| || || ||| Sbjct 432803 GTGGATTCCTTTTGGATGTTGTAGTCAGAGAGAGTACGGCCATCTTCAAGTTGCTTGCCG 432744 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || |||||||| | || ||||| | | ||| ||||| || |||||||| ||||| ||| Sbjct 432743 GCAAAGATAAGACGTTGTTGGTCAGGAGGGATACCTTCTTTATCTTGAATCTTTTGCTTG 432684 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || | || | ||| || || ||||| | || || || ||||| || |||||| Sbjct 432683 ACGTTATCAATAGAGTCCGAGGATTCGACTTCCAAGGTGATGGTCTTGCCAGTAAGAGTC 432624 Query 152088 TTCACGAAGACCTGCAT 152104 || ||||| | ||||| Sbjct 432623 TTGACGAAAATTTGCAT 432607 >seq27 Length=1513655 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| ||||| || |||||||| |||||||| || | || || | ||||| Sbjct 1427441 AGGACAAGATGGAGAGTGGATTCTTTTTGAATGTTGTAGTCTGATAGGGTACGGCCATCC 1427500 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| || || | | || || || | | || |||||||| ||| Sbjct 1427501 TCCAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCAGGAGGAATGCCTTCCTTGTCT 1427560 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || |||||| ||| | | || || ||| ||||| | ||||||||| Sbjct 1427561 TGAATCTTCTGCTTGACATGCTCAATGGCATCCGAGGACTCGACTTCCAATGTAATAGTT 1427620 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | ||| || || |||| ||||| Sbjct 1427621 TTTCCAGTCAAAGTTTTGACAAAGATTTGCAT 1427652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153819114700494