Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq21 174 4e-38 seq71 168 2e-36 seq77 131 4e-25 seq27 123 6e-23 >seq21 Length=571097 Score = 174 bits (192), Expect = 4e-38 Identities = 162/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || || || || || ||||| || ||| ||| ||| Sbjct 540094 CAAATCTTCGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCGGAC 540035 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || |||||||| ||||||||||| ||||||||||| |||||||| ||||| ||| Sbjct 540034 TCAATTGACAACGTCAAGCAAAAGATTCAAGACAAAGAAGGCATCCCTCCTGACCAACAA 539975 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || |||||||||||||| | ||||| | || || ||| || Sbjct 539974 CGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAACATC 539915 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || || || ||||| Sbjct 539914 CAAAAAGAATCTACTCTCCACCTTGT 539889 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || || || || || ||||| || ||| ||| ||| Sbjct 539866 CAAATCTTTGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCGGAC 539807 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || |||||||| |||||||| || ||||||||||| |||||||| ||||| ||| Sbjct 539806 TCTATTGATAACGTCAAGCAAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAACAA 539747 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || |||||||||||||| | ||||| | || || ||| || Sbjct 539746 CGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAACATC 539687 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || || || ||||| Sbjct 539686 CAAAAAGAATCTACTCTCCACCTTGT 539661 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || || || || || ||||| || ||| ||| ||| Sbjct 539638 CAAATCTTTGTCAAGACCCTGACTGGCAAGACTATTACTCTCGAAGTTGAATCCTCGGAC 539579 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || |||||||| |||||||| || ||||||||||| |||||||| ||||| ||| Sbjct 539578 TCAATTGACAACGTCAAGCAAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAACAA 539519 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || |||||||||||||| | ||||| | || || ||| || Sbjct 539518 CGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGCCGCACTCTCTCTGACTACAACATC 539459 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || |||||||| || |||| |||| Sbjct 539458 CAGAAAGAATCCACCTTGCA-CTTG 539435 >seq71 Length=978913 Score = 168 bits (186), Expect = 2e-36 Identities = 163/208 (78%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || || || |||||| | || || ||| ||| ||| Sbjct 432610 CAAATTTTCGTCAAGACTCTTACTGGCAAGACCATCACCTTGGAAGTCGAATCCTCGGAC 432669 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || |||||||| ||||||||||| || |||||||| |||||||| ||||| ||| Sbjct 432670 TCTATTGATAACGTCAAGCAAAAGATTCAAGATAAAGAAGGTATCCCTCCTGACCAACAA 432729 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| ||||| || || || |||||||| | ||||| | || || ||| || Sbjct 432730 CGTCTTATCTTTGCCGGCAAGCAACTTGAAGATGGCCGTACTCTCTCTGACTACAACATC 432789 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| ||||| || |||| |||| || Sbjct 432790 CAAAAGGAATCCACCTTGCA-CTTGGTT 432816 >seq77 Length=46662 Score = 131 bits (144), Expect = 4e-25 Identities = 122/154 (79%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||||| ||| |||| || || ||||| ||||||||||| ||||||||||| || ||||| Sbjct 33684 AGCTCTGACTCCATTGACAATGTCAAGCAAAAGATTCAAGACAAAGAAGGTATTCCTCCT 33743 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 ||||||||||| | || || || || || || | |||||||| | |||||| ||||| Sbjct 33744 GACCAGCAACGCTTGATTTTTGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCCGAT 33803 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| ||||||| ||||| || |||| |||| Sbjct 33804 TACAACATCCAAAAGGAATCCACCTTGCA-CTTG 33836 >seq27 Length=1513655 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||| | || |||||||| || || | || || || ||| || Sbjct 1427649 CAAATCTTTGTCAAAACTTTGACTGGAAAAACTATTACATTGGAAGTCGAGTCCTCGGAT 1427590 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||| ||| | ||||| || |||||||| ||||| ||||| || ||||| || || ||| Sbjct 1427589 GCCATTGAGCATGTCAAGCAGAAGATTCAAGACAAGGAAGGCATTCCTCCTGATCAACAA 1427530 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| || || || || ||||| | || || | || || ||| | Sbjct 1427529 CGTTTGATTTTTGCCGGCAAGCAACTGGAGGATGGCCGTACCCTATCAGACTACAACATT 1427470 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || || |||||||| Sbjct 1427469 CAAAAAGAATCCACTCTCCATCTTGT 1427444 Score = 116 bits (128), Expect = 9e-21 Identities = 121/155 (78%), Gaps = 3/155 (2%) Strand=Plus/Plus Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||||| ||| | ||||| || ||||| ||||||||||| ||||||||||| || ||||| Sbjct 550223 AGCTCTGACTCGATCGACAATGTCAAGCAAAAGATTCAAGACAAAGAAGGTATTCCTCCT 550282 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGA 178093 ||||| ||||| || ||||| || || || || | ||||| || | || |||| |||| Sbjct 550283 GACCAACAACGTCTGATCTTTGCTGGTAAGCAATTGGAAGACGGTCGCAC-CTTGTCCGA 550341 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| ||||||| ||||| || |||| |||| Sbjct 550342 CTACAACATCCAAAAGGAATCCACCTTGCA-CTTG 550375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729441800116