Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hesseltinella_20vesiculosa_20[genbank_20GCA_5F002104935.1_202017-04- 20] 114 sequences; 27,216,191 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq71 107 2e-18 seq21 91.5 1e-13 seq27 86.0 6e-12 >seq71 Length=978913 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||| |||| ||| ||||| || ||||| ||||| ||| Sbjct 433061 CCACCGCGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAG 433002 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||| || || || ||||| |||||||| | ||| Sbjct 433001 AGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGG 432942 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||| ||| |||||||| ||| | | | || ||| || || || Sbjct 432941 ATACCTTCCTTGTCTTGGATCTTTTGCTT-GACGTTGTCAATAGAGTCCGAGGATTCAAC 432883 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || |||| |||||||| || || ||||| Sbjct 432882 TTCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTTACAAAGATTTGCAT 432835 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || || ||||| || ||||| ||||| ||| Sbjct 433289 CCACCACGGAGACGGAGCACAAGGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAG 433230 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||||||||| || || || ||||| |||||||| | ||| Sbjct 433229 AGAGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGGCGTTGTTGGTCAGGGGGG 433170 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||| ||| |||||||| ||| | | | || ||| || || || Sbjct 433169 ATACCTTCCTTGTCTTGGATCTTTTGCTT-GACGTTGTCAATAGAGTCCGAGGATTCAAC 433111 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || |||| |||||||| || || ||||| Sbjct 433110 TTCGAGAGTAATGGTCTTGCCAGTCAAAGTCTTTACAAAGATTTGCAT 433063 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||| |||| ||| ||||| || ||||| ||||| ||| Sbjct 432833 CCACCGCGGAGACGCAGAACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCAGAG 432774 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || || ||||||||||| || || || || |||||||| | || Sbjct 432773 AGAGTACGGCCATCTTCAAGTTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAGGG 432714 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || || || || |||||||| ||| | | || ||| || || || Sbjct 432713 ATACCTTCTTTATCTTGAATCTTTTGCTT-GACGTTATCAATAGAGTCCGAGGATTCGAC 432655 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || || || || || || ||||| |||||||| |||||| Sbjct 432654 TTCCAAGGTGATGGTCTTGCCAGTAAGAGTCTTGACGAAAATTTGCATG 432606 >seq21 Length=571097 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||| |||| ||| || ||||| ||||| ||||| || Sbjct 539414 GCCACCACGGAGGCGAAGGACCAAGTGCAAGGTGGATTCTTTCTGGATGTTGTAGTCAGA 539473 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || |||||||||||||| || || || || || |||||||| | || Sbjct 539474 GAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGG 539533 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || || ||||| ||| |||||||| ||| | | | | ||| || || | Sbjct 539534 GATGCCTTCTTTGTCTTGGATCTTTTGCTT-GACGTTGTCAATTGAGTCCGAGGATTCAA 539592 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || | || || || || || ||||| ||||| || || || ||||| Sbjct 539593 CTTCGAGAGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 539641 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || || || || || ||||| ||||| ||| Sbjct 539871 CCACCACGGAGACGGAGCACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAG 539930 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| || || || || || |||||||| | || Sbjct 539931 AGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGG 539990 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || || ||||| || |||||||| ||| | | | | ||| || || || Sbjct 539991 ATGCCTTCTTTGTCTTGAATCTTTTGCTT-GACGTTGTCAATTGAGTCCGAGGATTCAAC 540049 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || || || || ||||| ||||| ||||| || |||||| Sbjct 540050 TTCGAGAGTAATAGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCATG 540098 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||| || || || || || || || ||||| ||||| ||| Sbjct 539643 CCACCACGGAGACGGAGCACAAGGTGGAGAGTAGATTCTTTTTGGATGTTGTAGTCAGAG 539702 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| || || || || || |||||||| | || Sbjct 539703 AGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGTTGTTGGTCAGGAGGG 539762 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || || ||||| ||| |||||||| ||| | | || ||| || || || Sbjct 539763 ATGCCTTCTTTGTCTTGGATCTTTTGCTT-GACGTTATCAATAGAGTCCGAGGATTCAAC 539821 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || || || ||||| ||||| || || || ||||| Sbjct 539822 TTCGAGAGTAATAGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 539869 >seq27 Length=1513655 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || ||||| || ||| || || |||||||| ||||| || Sbjct 1427425 GCCACCACGGAGACGAAGGACAAGATGGAGAGTGGATTCTTTTTGAATGTTGTAGTCTGA 1427484 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || | || || || ||||||||||| || |||| || ||||| || | || Sbjct 1427485 TAGGGTACGGCCATCCTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGTTGATCAGGAGG 1427544 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTG---TCGCTCGACTC 41811 || || |||||||| || || ||||| | | | | || || || ||||| Sbjct 1427545 AATGCCTTCCTTGTCTTGAATCTTCTGCTTGA--CATG-CTCAATGGCATCCGAGGACTC 1427601 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||| || || ||||| || |||| || || || || || |||||| Sbjct 1427602 GACTTCCAATGTAATAGTTTTTCCAGTCAAAGTTTTGACAAAGATTTGCATG 1427653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303341216800