Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq217 105 8e-18 seq162 100 3e-16 >seq217 Length=908848 Score = 105 bits (116), Expect = 8e-18 Identities = 299/457 (65%), Gaps = 7/457 (2%) Strand=Plus/Plus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 |||| || || || || || ||| || |||||||| | | || | ||||| || Sbjct 400052 AACAGCACGCAGGCAAAGTCCGTGTGCAGGCCCTCGTCGCGGCAGATCAGCTCGTTCGAG 400111 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || ||||| ||||| ||||| ||||| || ||||| || || |||||||| || || Sbjct 400112 AAGGTCAGTCCAGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATCGACGCAAACGAGCCC 400171 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG---CG 24302 || ||||| || || || || ||||||||||| | || | | || | || || Sbjct 400172 GAGAAGAAGATGCCCTCGACCGCCGCAAAGGCCACCAGGCGCACGCCGAACTTGGCCTCG 400231 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 | || || ||||| | ||||| ||||||||||| | || || || | || Sbjct 400232 CGGTTATCGATCCAGCGAAGCGCCCAGTCGGCCTTCTTGCGGATGCACGGGATGTTGTCG 400291 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 ||||| | || | | ||| || || || | || || ||||| | || Sbjct 400292 ATAGCGTGGAACAAAAAGTCGCGCTCCTTGGGGTCGCGGATGTACGTGTCAATGAGCAGC 400351 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 ||| | ||||| || ||||| ||||| ||| || || |||||||| | | ||| Sbjct 400352 GAGTACGTCTCCGAGTGGATGTTCTCAATCATCATCTGGAAGCCGTAGAACGACCGCGCC 400411 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTG--CTAAATTTTCATTCACTATTCCGT 24540 |||| ||||| || || | | ||| |||||| | | || || || || || |||| Sbjct 400412 TCGGGGATCTGAACCTCGGTGCTAAA--GTTCTGCACCAGGTTCTCGTTGACGATGCCGT 400469 Query 24541 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 24577 | ||| ||||| ||||| | || | || ||||| Sbjct 400470 CCGAGGCAGCAAAGAACGCGAGCACGTACTTGATAAA 400506 >seq162 Length=1352108 Score = 100 bits (110), Expect = 3e-16 Identities = 390/608 (64%), Gaps = 4/608 (1%) Strand=Plus/Plus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 |||||||| || ||||| || | | || || || || | ||| || | || |||| Sbjct 1303775 TCAAACTCATCGCCCCACACCTCCTGCATGCCGGGTGCCTCGTGCGGGCAGAACAGCGAC 1303834 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 54069 |||| ||| | | | || || ||||| || ||||| || ||||| || || ||| || Sbjct 1303835 CACTTGCCGCCGGCAATGACGCGCTTCATGAACAGATCCGGGATCCACAGCGC-ATAGAA 1303893 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 || || | || | ||||| || || ||||| ||||| |||||||| | Sbjct 1303894 CAGGTCGCGGGCCCGCACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAGGAACGCAAA 1303953 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 | ||| | ||||||||| |||| || || | | | || ||||| ||||| || || Sbjct 1303954 CACATCGGCATGCCACGGCTCCAGATAGATCGCAAACGCACCTGGCCGCTTGTTGCCGCC 1304013 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 ||| || | ||| | || ||||| || | || | || ||| || | || || || || Sbjct 1304014 CTGGTCGACGTACCGCGCCGTGTTGTTGAACACACGCAGCATCGGCACAAGCCCGTTCGA 1304073 Query 54250 TGCACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 54308 | || ||||| ||| | || || || | || || || || || | || | Sbjct 1304074 CGTGCCGTTGGTGCCCTGCAATGTATGAGCCCGTAGCCCGGATGTTGCTCACGTGCAGCC 1304133 Query 54309 CTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 54368 | || || || || | || || || ||||| || | ||| || |||||||||| Sbjct 1304134 CAATGCCGCCAGCGTTCTTGGAAATCTGCGCGCACACCTTCAGCGTGTCGTAGATGCCCT 1304193 Query 54369 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG-GTGACGACTAGTT 54427 | || || |||||| |||| | || || || || | || | |||| || Sbjct 1304194 CGATGCTGTCATCCGACATGGCCACAAGGAAGCACGACGAGAGCTGCGGGACGCGGCGTG 1304253 Query 54428 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 54487 |||| || || | || || || |||||||| || | ||| || | || |||||| Sbjct 1304254 CCCGAGTTGAACAGCGTCGGCGACGCGTGCGTGAAGAACTTTGACGACATGAGGTTGTAC 1304313 Query 54488 GTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 54547 |||||||| || | ||| || ||| | || || || | | || ||||| | || | Sbjct 1304314 GTCTCGATCGCCGCGTCAATGTCCGAGCCGTGGATGCCCAGGGACACGCGCATCACCAGG 1304373 Query 54548 TGCTGAGG 54555 ||||| || Sbjct 1304374 TGCTGCGG 1304381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593719915314960