Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq153 122 7e-23 seq151 122 7e-23 seq2 120 3e-22 seq155 107 2e-18 seq79 107 2e-18 seq1 107 2e-18 >seq153 Length=77323 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| |||| ||| |||||||| || ||||| ||||||| Sbjct 48278 CCACCGCGCAGGCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAG 48219 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| ||||| || | || || | ||||||||| || Sbjct 48218 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGG 48159 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||| || || || | | ||| || || | |||| Sbjct 48158 ATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATGGTGTCCGACGACTCCACC 48099 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||||||||| | || || ||||| || ||||| Sbjct 48098 TCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 48052 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| |||| ||| |||||||| || ||||| ||||||| Sbjct 48506 CCACCGCGCAGGCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAG 48447 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| ||||| || | || || | ||||||||| || Sbjct 48446 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGG 48387 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||| || || || | | ||| ||||| | |||| Sbjct 48386 ATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATGGTATCCGACGACTCCACC 48327 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || |||||||| || | || || || || || ||||| Sbjct 48326 TCGAGGGTGATAGTCTTGCCAGTGAGGGTCTTCACGAAAATCTGCAT 48280 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || ||||| | ||||||| |||| ||| |||||||| || ||||| ||||| Sbjct 48738 GTTGCCGCCGCGCAGGCGAAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTC 48679 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 || || || || ||||||| ||||| ||||| || | || || | ||||||||| Sbjct 48678 CGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGG 48619 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | |||||||||||| ||||| || || || | | | | || || | ||| Sbjct 48618 CGGGATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCAATGGTGTCCGACGACTC 48559 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | || | ||| || ||||||||||| | || || || || || ||||| Sbjct 48558 CACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 48508 >seq151 Length=1709611 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||| | |||| || |||||||| || ||||| ||||||| Sbjct 449784 CCACCACGCAGGCGGAGCACGAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 449725 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| ||||| || | || || | ||||||||| ||| Sbjct 449724 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGA 449665 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || || | | ||| || || | |||| Sbjct 449664 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGTTGTCGATGGTGTCCGACGACTCCACC 449605 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || ||||| || || ||||| Sbjct 449604 TCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 449558 >seq2 Length=801100 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || ||||| | |||||||| |||| ||| |||||||| || ||||| ||||| Sbjct 378731 GTTGCCGCCGCGCAGGCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTC 378672 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 || ||||| || ||||||| ||||| ||||| || | || || | ||||||||| Sbjct 378671 CGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGG 378612 Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | ||| |||||||| ||||| || || || | | ||| || || | ||| Sbjct 378611 CGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATGGTGTCCGACGACTC 378552 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | || | ||| || ||||||||||| | || || || || || ||||| Sbjct 378551 CACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 378501 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| ||| |||||||| || ||||| ||||||| Sbjct 378271 CCACCGCGCAGGCGAAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAG 378212 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| ||||| || | || || | ||||||||| || Sbjct 378211 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGG 378152 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| || || || | | ||| || || | |||| Sbjct 378151 ATGCCCTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATGGTGTCCGACGACTCCACC 378092 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || ||||||||||| | || || ||||| || ||||| Sbjct 378091 TCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 378045 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| ||| |||||||| || ||||| ||||||| Sbjct 378499 CCACCGCGCAGGCGAAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAG 378440 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| ||||| || | || || | ||||||||| || Sbjct 378439 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGG 378380 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| || || || | | ||| || || | |||| Sbjct 378379 ATGCCCTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCGATGGTGTCCGACGACTCCACC 378320 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||||||||| | || || || || || ||||| Sbjct 378319 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 378273 >seq155 Length=76293 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| || | || |||||||| || ||||| ||||||| Sbjct 26932 CCACCACGCAGGCGGAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 26873 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| ||||| || | || || | ||||||||| ||| Sbjct 26872 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 26813 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || || | ||| || || | |||| Sbjct 26812 ATACCCTCCTTGTCCTGGATCTTCTGCTTAACGTTATCGATGGTGTCGGAAGACTCCACC 26753 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || || || || ||||| Sbjct 26752 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGAAAATCTGCAT 26706 >seq79 Length=276002 Score = 107 bits (118), Expect = 2e-18 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 23809 ACGTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGC-GTCGGGCGCGCCGTGTCTCTGGCG 23867 ||||||||||||||||| || || |||||| | || ||||| ||||||||| ||| Sbjct 193105 ACGTTGCCCAGGTCGCCCACATGGCGCTCCTCAGCCGTCGG-CGCGCCGTGCGTCTTCTT 193047 Query 23868 GGTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTG 23927 | ||||| |||||| ||| || |||||||||||||| | ||||||| || ||||| Sbjct 193046 GAACGGGTTGAAGTGCGGGCCCGCCGACGTGCAGCCGTTCGAGTTGTCGCCAAACTCGTG 192987 Query 23928 CACGTGAAAACCGTGC 23943 |||||| || |||||| Sbjct 192986 CACGTGGAATCCGTGC 192971 >seq1 Length=3302357 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| || | || |||||||| || ||||| ||||||| Sbjct 872086 CCACCACGCAGGCGGAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 872027 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| ||||| || | || || | ||||||||| ||| Sbjct 872026 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 871967 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || || | ||| || || | |||| Sbjct 871966 ATACCCTCCTTGTCCTGGATCTTCTGCTTAACGTTATCGATGGTGTCGGAAGACTCCACC 871907 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || || || || ||||| Sbjct 871906 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGAAAATCTGCAT 871860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422258031793532