Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq162 168 1e-36 seq11 159 7e-34 seq1 114 3e-20 seq150 105 1e-17 >seq162 Length=1352108 Score = 168 bits (186), Expect = 1e-36 Identities = 277/391 (71%), Gaps = 14/391 (4%) Strand=Plus/Plus Query 253999 ACCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGG 254058 |||| || ||| |||| ||| | || || || || || |||||||| || || || |||| Sbjct 948960 ACCTGCCGCATCTGCTGTTCTATGGGCCGCCGGGGACTGGCAAGACCTCGACGATTCTGG 949019 Query 254059 CGCTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAG-CGCGTGCTCGAGCTGAAC 254117 | |||||||| | ||| ||| || | ||||| ||| |||||||| ||||||||| Sbjct 949020 CACTGGCCCGCGACATGTACGGCCCGGAGGCCATGA-AGACACGCGTGCTGGAGCTGAAC 949078 Query 254118 GCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAG-ACTTT-CTCCAAGA 254175 || || || || ||||| | | ||| || |||| |||| ||||| ||||| | | || Sbjct 949079 GCCTCAGATGAGCGCGGTATCGGCGTGGTGCGCGCCAAGGTCAAGGACTTTGCGCGCAGC 949138 Query 254176 TGTCGATTTC---GTCGTTCCA----ACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTG 254228 || | | | | || ||| ||||| | ||||| | |||| | || |||||| Sbjct 949139 -GTGGTGTCCCCAGCCGACCCACAGTACCCGTCG--CCGCCGTACAAGATTGTAATCCTG 949195 Query 254229 GACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACG 254288 || ||||| ||| |||||||||| || || ||| | || || || || | ||||||| | Sbjct 949196 GATGAGGCCGACTCCATGACGGCAGATGCCCAGGCAGCGCTGCGGCGGATCATGGAGAAG 949255 Query 254289 CACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCG 254348 || | | | || || || ||||| |||||||| |||||| ||||||| ||| Sbjct 949256 TACGCGCGTATTACACGGTTCTGCCTTGTGTGCAATTACGTGAGCCGCATCATCGAGCCG 949315 Query 254349 CTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 |||||| ||||||||||| || || |||| Sbjct 949316 CTGGCTAGCCGGTGCGCCAAATTCCGTTTCA 949346 Score = 116 bits (128), Expect = 8e-21 Identities = 648/1018 (64%), Gaps = 48/1018 (5%) Strand=Plus/Minus Query 248461 TTCGACAAAATCTCGGCGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTC 248520 |||||||| ||| || ||||||||| ||||| || | || || | | | || ||| Sbjct 1304839 TTCGACAAGATCACGCGGCGCATCAACAAGCTGTGCGACGGGCTCAACACGAGCTACGTT 1304780 Query 248521 GATCATGTGGCCATCGCCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACA 248580 || | ||| |||| ||||| || || |||||| ||| || || || ||| Sbjct 1304779 GACTCGGCGGCGGTCGCGCAGAAGGTCATCCAGGGCGTGTACCAGGGCGTGACCACGGTC 1304720 Query 248581 GAACTGGACACCTTAGCTGCGGAGACGGCGGCGTACATGGCGATTGCA-CACCCCGACTA 248639 || || |||| | | || || ||||| || ||||||||| || | ||| ||||||||||| Sbjct 1304719 GAGCTCGACAACCTGGCAGCCGAGACCGCAGCGTACATGACGGT-GCAGCACCCCGACTA 1304661 Query 248640 CTCGCTGCTGGCCGGGAGGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGA------ 248693 | || | ||||| | | | ||||| |||| | || || || || ||| | || Sbjct 1304660 CGCGGTTCTGGCGGCGCGTATCGCGATCTCGAACCTGCAGAAGGAGACGCACGATAACTT 1304601 Query 248694 GTCG---TTCGTCGAA--AC---CATG-GCTGACCTAC---ATGCCTATGGGATGGTCGC 248741 ||| | |||| | || || | | | | | || | | | | |||| Sbjct 1304600 CTCGGATGTGGTCGCAGGACCTGCACGCGTTCATCAACCCAAAGACCAAAAAGCACTCGC 1304541 Query 248742 CGATGACGTC--CACACCGTC--------ATTCAGGACAACGCGCACCTCCTGGACGGCG 248791 ||||| ||| || | || | ||| | ||| | || | ||| | Sbjct 1304540 CGATGGTGTCTGACCAGCTTCTGGAGCTGGTGCAGCAGAACAAGGACAAGATCAACGCGG 1304481 Query 248792 CGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAAT 248851 || |||||||| || || | ||| | ||||||| ||||| ||||| ||| | Sbjct 1304480 CGGTTGACTACTCGCGCGACTTCAACTACAACTTCTTTGGGTTCAAGACGCTCGAGCGCT 1304421 Query 248852 CGTATCTCCTCAAAATTGAT-GGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910 ||||||| || || || ||| | | || || || |||||| || ||||||| Sbjct 1304420 CGTATCTGCTGCGCATCAATGGGCGTGTTGGTCGAGCGCCCGCAGCACCTGGTGATGCGC 1304361 Query 248911 GTGGCTGTCGGGATTCACAAGGAT--GACATAGAGAGCGTGCTCGAGACGTACACCGGAA 248968 ||| | | || || ||| || | ||||| || | | |||||||||||| | | Sbjct 1304360 GTGTCCCTGGGCATCCAC--GGCTCGGACATTGACGCGGCGATCGAGACGTACAACCTCA 1304303 Query 248969 TG-AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC-CGTCAA 249026 || || || | | | || || || | |||||||| |||||| | || || | | Sbjct 1304302 TGTCGTCAAAG-TTCTTCACGCACGCGTCGCCGACGCTGTTCAACTCGGGCACGCCGCGT 1304244 Query 249027 CAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTA 249086 | ||||| |||||||| ||| | |||||| || ||| |||| ||||| || Sbjct 1304243 CCCGCAGCTCTCGTCGTGCTTCCTTGTGGCCATGTCGGATGACAGCATCGAGGGCATCTA 1304184 Query 249087 TGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGT 249146 |||||||| || | ||| ||||||| || ||| ||||| || || || ||| Sbjct 1304183 CGACACGCTGAAGGTGTGCGCGCAGATTTCCAAGAACGCTGGCGGCATTGGGCTGCACGT 1304124 Query 249147 CTCCAACATCCGAGCGAAGGGTTCGTACA-TCAAAGGTACAAATGG--GGTCAGTGATGG 249203 ||||||||| || | ||| || |||| | | || || || || ||| | || Sbjct 1304123 GAGCAACATCCGGGCTACGGGCTCATACATTGCAGGGCACCAACGGCACGTC--GAACGG 1304066 Query 249204 TATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGG--- 249260 | || || | || || || | ||| || ||| | || |||||| ||| Sbjct 1304065 GCTTGTGCCGATGCTGCGTGTGTTCAACAACACGGCGCGGTACGTCGACCAGGGCGGCAA 1304006 Query 249261 -GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGT 249319 || | ||| | |||| || || ||| |||| |||||| |||||| | || | || Sbjct 1304005 CAAGCGGCCAGGTG-CGTTTGCGATCTATCTGGAGCCGTGGCATGCCGATGTGTTTGCGT 1303947 Query 249320 TCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACG 249379 ||||||| || |||||| ||||||| ||| || | || || ||||| ||||| | Sbjct 1303946 TCCTGGATCTGCGCAAGAACCACGGCAAGGAGGAGGTGCGGGCCCGCGACCTGTTCTATG 1303887 Query 249380 GCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCT 249437 |||||| || | || |||||||| ||||||| |||| |||| | ||| |||| Sbjct 1303886 CGCTGTGGATCCCGGATCTGTTCATGAAGCGCGTCATTGCCGGCGGCAAGTGGTCGCT 1303829 >seq11 Length=33344 Score = 159 bits (176), Expect = 7e-34 Identities = 275/390 (71%), Gaps = 12/390 (3%) Strand=Plus/Plus Query 253999 ACCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGG 254058 |||| || ||| |||| ||| |||| || || || || |||||||| || || || |||| Sbjct 6323 ACCTGCCACATCTGCTGTTCTACGGGCCGCCGGGGACTGGCAAGACCTCGACAATTCTGG 6382 Query 254059 CGCTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAG-CGCGTGCTCGAGCTGAAC 254117 | |||||||| | ||| || || | ||||| ||| |||||||| ||||||||| Sbjct 6383 CACTGGCCCGCGACATGTACGGTCCGGAGGCCATGA-AGACACGCGTGCTGGAGCTGAAC 6441 Query 254118 GCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAG-ACTTT-CTCCAAGA 254175 || || || || ||||| | | ||| || |||| |||| ||||| ||||| | | || Sbjct 6442 GCCTCAGATGAGCGCGGTATCGGCGTGGTGCGCGCCAAGGTCAAGGACTTTGCGCGCAGC 6501 Query 254176 -TGTCGATTTCGTC-GTTCCA----ACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGG 254229 || | || | | ||| ||||| | ||||| | |||| | || ||||||| Sbjct 6502 GTGGTGTCCCCGGCAGACCCACAGTACCCGTCG--CCGCCGTACAAGATTGTAATCCTGG 6559 Query 254230 ACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGC 254289 | ||||| ||| |||||||||| || || ||| | || || || || | ||||||| | Sbjct 6560 ATGAGGCCGACTCCATGACGGCAGATGCCCAGGCAGCGCTGCGGCGGATCATGGAGAAGT 6619 Query 254290 ACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCGC 254349 || | | | || || || || || |||||||| |||||| ||||||| |||| Sbjct 6620 ACGCGCGTATTACACGGTTCTGTCTTGTGTGCAATTACGTGAGCCGCATCATCGAGCCGC 6679 Query 254350 TGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 ||||| ||||||||||| || || |||| Sbjct 6680 TGGCTAGCCGGTGCGCCAAATTCCGCTTCA 6709 >seq1 Length=3302357 Score = 114 bits (126), Expect = 3e-20 Identities = 214/309 (69%), Gaps = 14/309 (5%) Strand=Plus/Plus Query 115255 AGGCTGTTGATCGCAGATCTCACGTCTCCGTCCGCAACGCACGCCAGAGCTCCGATGCCA 115314 ||| |||||| ||| | || ||| ||||| ||| | |||||| ||| | | |||| Sbjct 2659933 AGGTTGTTGACCGCCTGCCGCATGTCGCCGTCGGCAGAGAACGCCACAGCCTCCAGGCCA 2659992 Query 115315 CCGGGGTCGTACTCGACG--CCCGCCATGTCACAA----ACCTGACGAATTCTCAAACGA 115368 ||||| ||||||||| | || || | |||| ||| | || | || | Sbjct 2659993 TCGGGGCTGTACTCGACCGACTCGGCACGGCACACCTCCACCAGCCGC---CGCA---GC 2660046 Query 115369 AGCTGCGCGT-CGTCAACTTTCGAAAACCTTAATATCGCACATCTGCTCTGAATCGGTTC 115427 | |||| ||| ||||| ||| | | | || | || || || | |||||| ||||| || Sbjct 2660047 ACCTGCTCGTTCGTCAGCTTGCCATA-CCGCAGAATTGCGCACCGGCTCTGGATCGGCTC 2660105 Query 115428 GATGATTTTGGTGGAGTTGTTGCAGACTATGATGAACCGCGTCGTGCTCGAGTAAACATC 115487 |||||| ||| || ||||||| | | | ||||||||||||| ||||||| | || Sbjct 2660106 GATGATCTTGCCCGACAGGTTGCAGGCCAGGGCGAACCGCGTCGTGTTCGAGTACAGCTC 2660165 Query 115488 CATGATCCGTCGCAGCGCCTGGAAAGCACCAGGTGTCATCGAGTCTGCCTCGTCGAGAAC 115547 ||| |||| ||||||||||| || ||||| ||||| |||||||||||| || | Sbjct 2660166 CATCGTCCGCCGCAGCGCCTGCTGCGCGCCAGGCGTCATGTTGTCTGCCTCGTCCAGGAT 2660225 Query 115548 GACAATCTT 115556 || ||||| Sbjct 2660226 GATGATCTT 2660234 >seq150 Length=80339 Score = 105 bits (116), Expect = 1e-17 Identities = 212/309 (69%), Gaps = 14/309 (5%) Strand=Plus/Plus Query 115255 AGGCTGTTGATCGCAGATCTCACGTCTCCGTCCGCAACGCACGCCAGAGCTCCGATGCCA 115314 ||| |||||| ||| | || ||| ||||| ||| | |||||| || | | |||| Sbjct 8486 AGGTTGTTGACCGCCTGCCGCATGTCGCCGTCGGCAGAGAACGCCACGGCCTCCAGGCCA 8545 Query 115315 CCGGGGTCGTACTCGACG--CCCGCCATGTCACAA----ACCTGACGAATTCTCAAACGA 115368 ||||| |||||| || | || || | |||| ||| | || | || | Sbjct 8546 TCGGGGCTGTACTCAACCGACTCGGCACGGCACACCTCCACCAGCCGC---CGCA---GC 8599 Query 115369 AGCTGCGCGT-CGTCAACTTTCGAAAACCTTAATATCGCACATCTGCTCTGAATCGGTTC 115427 | |||| ||| ||||| ||| | | | || | || || || | |||||| ||||| || Sbjct 8600 ACCTGCTCGTTCGTCAGCTTGCCATA-CCGCAGAATTGCGCACCGGCTCTGGATCGGCTC 8658 Query 115428 GATGATTTTGGTGGAGTTGTTGCAGACTATGATGAACCGCGTCGTGCTCGAGTAAACATC 115487 |||||| ||| || ||||||| | | | ||||||||||||| ||||||| | || Sbjct 8659 GATGATCTTGCCCGACAGGTTGCAGGCCAGGGCGAACCGCGTCGTGTTCGAGTACAGCTC 8718 Query 115488 CATGATCCGTCGCAGCGCCTGGAAAGCACCAGGTGTCATCGAGTCTGCCTCGTCGAGAAC 115547 ||| |||| ||||||||||| || ||||| ||||| |||||||||||| || | Sbjct 8719 CATCGTCCGCCGCAGCGCCTGCTGCGCGCCAGGCGTCATGTTGTCTGCCTCGTCCAGGAT 8778 Query 115548 GACAATCTT 115556 || ||||| Sbjct 8779 GATGATCTT 8787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073763277017536