Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq217 109 7e-19 seq162 91.5 2e-13 >seq217 Length=908848 Score = 109 bits (120), Expect = 7e-19 Identities = 300/457 (66%), Gaps = 7/457 (2%) Strand=Plus/Plus Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 |||| || || || || || ||| || |||||||| | | || | ||||| || Sbjct 400052 AACAGCACGCAGGCAAAGTCCGTGTGCAGGCCCTCGTCGCGGCAGATCAGCTCGTTCGAG 400111 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || || ||||| ||||| ||||| ||||| || ||||| || || |||||||| || || Sbjct 400112 AAGGTCAGTCCAGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATCGACGCAAACGAGCCC 400171 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 36325 || ||||| || || || || ||||||||||| | || | | | || | || | Sbjct 400172 GAGAAGAAGATGCCCTCGACCGCCGCAAAGGCCACCAGGCGCACGCCGAACTTGGCCTCG 400231 Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 | || || ||||| | ||||| ||||||||||| | || || || | || Sbjct 400232 CGGTTATCGATCCAGCGAAGCGCCCAGTCGGCCTTCTTGCGGATGCACGGGATGTTGTCG 400291 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 ||||| | || | | ||| || || || | || || ||||| | || Sbjct 400292 ATAGCGTGGAACAAAAAGTCGCGCTCCTTGGGGTCGCGGATGTACGTGTCAATGAGCAGC 400351 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 ||| | ||||| || ||||| ||||| ||| || || |||||||| | | ||| Sbjct 400352 GAGTACGTCTCCGAGTGGATGTTCTCAATCATCATCTGGAAGCCGTAGAACGACCGCGCC 400411 Query 36506 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTG--CTAAATTTTCATTCACTATTCCGT 36563 |||| ||||| || || || | ||| |||||| | | || || || || || |||| Sbjct 400412 TCGGGGATCTGAACCTCGGTGCTAAA--GTTCTGCACCAGGTTCTCGTTGACGATGCCGT 400469 Query 36564 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 36600 | ||| ||||| ||||| | || | || ||||| Sbjct 400470 CCGAGGCAGCAAAGAACGCGAGCACGTACTTGATAAA 400506 >seq162 Length=1352108 Score = 91.5 bits (100), Expect = 2e-13 Identities = 388/608 (64%), Gaps = 4/608 (1%) Strand=Plus/Plus Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 || ||||| || ||||| || | | || || || || | ||| || | || |||| Sbjct 1303775 TCAAACTCATCGCCCCACACCTCCTGCATGCCGGGTGCCTCGTGCGGGCAGAACAGCGAC 1303834 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 66100 |||| ||| | | | || || ||||| || ||||| || ||||| || || ||| || Sbjct 1303835 CACTTGCCGCCGGCAATGACGCGCTTCATGAACAGATCCGGGATCCACAGCGC-ATAGAA 1303893 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 | || | || | ||||| || || ||||| ||||| |||||||| | Sbjct 1303894 CAGGTCGCGGGCCCGCACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAGGAACGCAAA 1303953 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 66220 | ||| ||||||||| |||| || || || | | || ||||| ||||| || || Sbjct 1303954 CACATCGGCATGCCACGGCTCCAGATAGATCGCAAACGCACCTGGCCGCTTGTTGCCGCC 1304013 Query 66221 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 66280 ||| || | ||| | || ||||| || | || | || ||| || | || || || || Sbjct 1304014 CTGGTCGACGTACCGCGCCGTGTTGTTGAACACACGCAGCATCGGCACAAGCCCGTTCGA 1304073 Query 66281 TGTACCATTGGT-CCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGAC 66339 || || ||||| ||| | || || || | || || || || || | || | Sbjct 1304074 CGTGCCGTTGGTGCCCTGCAATGTATGAGCCCGTAGCCCGGATGTTGCTCACGTGCAGCC 1304133 Query 66340 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 66399 | || || || || | || || || ||||| || | ||| || |||||||||| Sbjct 1304134 CAATGCCGCCAGCGTTCTTGGAAATCTGCGCGCACACCTTCAGCGTGTCGTAGATGCCCT 1304193 Query 66400 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG-GTGACGACTAGTT 66458 | || || |||||| |||| | || || || || | || | |||| || Sbjct 1304194 CGATGCTGTCATCCGACATGGCCACAAGGAAGCACGACGAGAGCTGCGGGACGCGGCGTG 1304253 Query 66459 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 66518 |||| || || | || || || |||||||| || | ||| || | || |||||| Sbjct 1304254 CCCGAGTTGAACAGCGTCGGCGACGCGTGCGTGAAGAACTTTGACGACATGAGGTTGTAC 1304313 Query 66519 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 66578 ||||| || || | ||| || ||| | || || || | | || ||||| | || | Sbjct 1304314 GTCTCGATCGCCGCGTCAATGTCCGAGCCGTGGATGCCCAGGGACACGCGCATCACCAGG 1304373 Query 66579 TGCTGAGG 66586 ||||| || Sbjct 1304374 TGCTGCGG 1304381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658170932434680