Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq224 111 1e-19 seq57 111 1e-19 seq162 104 2e-17 seq217 98.7 7e-16 >seq224 Length=36005 Score = 111 bits (122), Expect = 1e-19 Identities = 112/143 (78%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 33575 AGATGGGCGACAAGTTTGCATCG-TTCACGGCCCAGAAGGGCACGTGCGGCATGATGTAC 33633 ||||||||||||||||||| ||| ||||| |||||||||||| ||||| | |||| Sbjct 29851 AGATGGGCGACAAGTTTGCGTCGCGACACGG-CCAGAAGGGCACTATTGGCATCACGTAC 29909 Query 33634 GACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCAACCCG 33693 | ||||||||||||| ||||||| |||||||| || ||| | ||||||||||| Sbjct 29910 CGCACCGAGGACATGCCGTTCTCGGCCGAGGGCGTGGTGCCCGACATCATCATCAACCCG 29969 Query 33694 CATGCGTTCCCCTCGCGCATGAC 33716 || || | || ||||| ||||| Sbjct 29970 CACGCCATTCCGTCGCGTATGAC 29992 >seq57 Length=497762 Score = 111 bits (122), Expect = 1e-19 Identities = 112/143 (78%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 33575 AGATGGGCGACAAGTTTGCATCG-TTCACGGCCCAGAAGGGCACGTGCGGCATGATGTAC 33633 ||||||||||||||||||| ||| ||||| |||||||||||| ||||| | |||| Sbjct 209414 AGATGGGCGACAAGTTTGCGTCGCGACACGG-CCAGAAGGGCACTATTGGCATCACGTAC 209472 Query 33634 GACCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCAACCCG 33693 | ||||||||||||| ||||||| |||||||| || ||| | ||||||||||| Sbjct 209473 CGCACCGAGGACATGCCGTTCTCGGCCGAGGGCGTGGTGCCCGACATCATCATCAACCCG 209532 Query 33694 CATGCGTTCCCCTCGCGCATGAC 33716 || || | || ||||| ||||| Sbjct 209533 CACGCCATTCCGTCGCGTATGAC 209555 >seq162 Length=1352108 Score = 104 bits (114), Expect = 2e-17 Identities = 134/180 (74%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 33542 TCAAGATCAAGCTGCGCAAGATACGCATACCAGAGATGGGCGACAAGTTTGCATCGTT-C 33600 ||||| || |||||| ||| ||| || ||| | |||||||||||| | || | Sbjct 1313287 TCAAGTTCCTGCTGCGGCAGACGCGCCGGCCCGAGCTTGGCGACAAGTTTTCGTCTCGAC 1313228 Query 33601 ACGGCCCAGAAGGGCACGTGCGGCATGAT-GTACGACCAGTGGGACATGCCGTTCACGGC 33659 | |||| |||||||| ||| ||||| || || | | ||| ||||||||||||||||| Sbjct 1313227 ATGGCC-AGAAGGGCGTGTGTGGCATCATTGTGC-AGCAGGAGGACATGCCGTTCACGGA 1313170 Query 33660 CGACGGCGTGGTCCCGGACCTAGTCATCAACCCGCATGCGTTCCCCTCGCGCATGACGGT 33719 | ||| ||| |||||||| | |||| |||||||| | ||||| ||||| ||||| || Sbjct 1313169 CCGCGGTGTGTTCCCGGACATCATCATGAACCCGCACGGTTTCCCGTCGCGAATGACTGT 1313110 >seq217 Length=908848 Score = 98.7 bits (108), Expect = 7e-16 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 ||||||||||||| || || ||| || | || || || || |||||| | || ||||||| Sbjct 400205 TGGCCTTTGCGGCGGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCGTCGATCTTCTGGC 400146 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | ||||| || || ||||| || || | || || |||||| |||| |||| |||| Sbjct 400145 TCAAGAAGCGCGGCCTGATGCCTGGACTGACCTTCTCGAACGAGCTGATCTGCCGCGACG 400086 Query 22868 AAGGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901 | || || ||| |||||||| || ||||||| Sbjct 400085 AGGGCCTGCACACGGACTTTGCCTGCGTGCTGTT 400052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356232614457481