Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq217 89.7 5e-13 seq153 84.2 2e-11 seq2 82.4 8e-11 >seq217 Length=908848 Score = 89.7 bits (98), Expect = 5e-13 Identities = 335/523 (64%), Gaps = 7/523 (1%) Strand=Plus/Minus Query 52532 TCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGA 52591 || ||||| | ||||| | ||||| | ||||| |||| || ||||| | |||| Sbjct 400301 TCCACGCTATCGACAACATCCCGTGCATCCGCAAGAAGGCCGACTGGGCGCTTCGCTGGA 400242 Query 52592 TCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTG 52651 |||| ||| | | |||| || | || || ||||| || ||||| || || || Sbjct 400241 TCGATAACCGCGAGGCCAAGTTCGGCGTGCGCCTGGTGGCCTTTGCGGCGGTCGAGGGCA 400182 Query 52652 TGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGCCCG 52711 | || || ||||| |||||| | || || | |||| | ||| | ||||| | Sbjct 400181 TCTTCTTCTCGGGCTCGTTTGCGTCGATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCTG 400122 Query 52712 GCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGT 52771 | || || || |||||| |||| | |||||||| || ||||||| || ||||| | Sbjct 400121 GACTGACCTTCTCGAACGAGCTGATCTGCCGCGACGAGGGCCTGCACACGGACTTTGCCT 400062 Query 52772 GTTTG-TATTATAATACGCGC-GTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACAT 52829 | || | || | || || || | | | || || || | || Sbjct 400061 GCGTGCTGTTCCACCACCTGCAGTCCCCGCC-----GGCCGCCGAGGTCATCCTCCAGAT 400007 Query 52830 GTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATT 52889 | | ||||| ||| ||| || | ||||| | | || || | ||||| ||| | Sbjct 400006 CATCACCGAGGCTGTCACCATCGAGCAGGAGTTCCTGTCCGAGGCGCTGCCCGTGTCACT 399947 Query 52890 GTTGGGCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTT 52949 | | ||||||||||| | | |||||| |||| |||||||||||||| ||| | ||| | Sbjct 399946 GATCGGCATGAACGCCAAGCTCATGTGCCAGTATATCGAGTTTGTTGCTGACCGCCTGCT 399887 Query 52950 GATGCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAA 53009 | | || || ||||| || |||| || |||||||| || ||| ||| Sbjct 399886 GGTCGCTCTGGGCCAGCCCAAGCACTACCTGGCCACCAACCCCTTCGACTTCATGGACAT 399827 Query 53010 CATATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTG 53052 || ||| | ||||||| || ||||| ||||||| || ||| Sbjct 399826 GATCTCGATGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTG 399784 >seq153 Length=77323 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | || | || | ||| | || ||||| || || ||||| || || Sbjct 48735 GCCGCCGCGCAGGCGAAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 48676 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||| |||||||| || || || |||| || || ||||| || || || Sbjct 48675 GAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGG 48616 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| || || || || | | || | ||||| | | |||||| Sbjct 48615 GATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCAATGGTGTCCGACGACTCCAC 48556 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | ||| | ||||||||||| | || || ||||| || |||||| Sbjct 48555 CTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACGAAAATCTGCATA 48507 >seq2 Length=801100 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || || ||||| || || | |||| ||| ||| Sbjct 378481 ACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 378422 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || || |||| || || ||||| || || || ||||| || ||||| Sbjct 378421 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGA 378362 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || || | | || | ||||| | | ||||||||| | ||| | |||||| Sbjct 378361 ATCTTCTGCTTGACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATGGTCTTG 378302 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | || || ||||| || |||||| Sbjct 378301 CCGGTGAGGGTCTTCACGAAAATCTGCATA 378272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062592418400