Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq217 132 7e-26 seq162 95.1 2e-14 >seq217 Length=908848 Score = 132 bits (146), Expect = 7e-26 Identities = 390/598 (65%), Gaps = 10/598 (2%) Strand=Plus/Plus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| || || || || || |||||| |||||||| | | || || ||||| || Sbjct 400052 AACAGCACGCAGGCAAAGTCCGTGTGCAGGCCCTCGTCGCGGCAGATCAGCTCGTTCGAG 400111 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || ||||| ||||| ||||| ||||| || ||||| || || |||||||| || || Sbjct 400112 AAGGTCAGTCCAGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATCGACGCAAACGAGCCC 400171 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC---G 50127 || |||||||| || || || || |||||||| || || | | | || | |||| | Sbjct 400172 GAGAAGAAGATGCCCTCGACCGCCGCAAAGGCCACCAGGCGCACGCCGAACTTGGCCTCG 400231 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 | || || ||||| | ||||| ||||||||||| | || || || | || Sbjct 400232 CGGTTATCGATCCAGCGAAGCGCCCAGTCGGCCTTCTTGCGGATGCACGGGATGTTGTCG 400291 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 || || | || | | ||| || || || | || || || || | || Sbjct 400292 ATAGCGTGGAACAAAAAGTCGCGCTCCTTGGGGTCGCGGATGTACGTGTCAATGAGCAGC 400351 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 ||| | ||||| || ||||| ||||| |||||| || |||||||| | | ||| Sbjct 400352 GAGTACGTCTCCGAGTGGATGTTCTCAATCATCATCTGGAAGCCGTAGAACGACCGCGCC 400411 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAG--CTAAATTTTCATTCACTATTCCGT 50365 |||| ||||| || || || | ||| |||| | | | || || || || || |||| Sbjct 400412 TCGGGGATCTGAACCTCGGTGCTAAA--GTTCTGCACCAGGTTCTCGTTGACGATGCCGT 400469 Query 50366 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA--- 50422 | ||| ||||| ||||| | || | || ||||| || |||||| | | Sbjct 400470 CCGAGGCAGCAAAGAACGCGAGCACGTACTTGATAAAGTGACGCTCGTTGTCGTTCAGGC 400529 Query 50423 GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 50482 | || | ||| | || || | || | || | ||| || | ||||| || || | Sbjct 400530 GGTTGTCCCAGTGGCCCATGTCCTGCGACAGGTCGATTTCCTCGGCCGTCCAGAACGACG 400589 Query 50483 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 |||| ||| || ||||| | |||||| || || || | ||| ||||| || || || Sbjct 400590 CCTCGTGCTTCTTGTACATCTCCCAGATCTCGTGGTACTTGATCGGGAACATGACGAA 400647 >seq162 Length=1352108 Score = 95.1 bits (104), Expect = 2e-14 Identities = 389/608 (64%), Gaps = 4/608 (1%) Strand=Plus/Plus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 || ||||| || ||||| || || | | || || |||| || || | || |||| Sbjct 1303775 TCAAACTCATCGCCCCACACCTCCTGCATGCCGGGTGCCTCGTGCGGGCAGAACAGCGAC 1303834 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 79979 |||| || | | | || || ||||| || ||||| || ||||| || || ||| || Sbjct 1303835 CACTTGCCGCCGGCAATGACGCGCTTCATGAACAGATCCGGGATCCACAGCGC-ATAGAA 1303893 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 || || | || | |||||| || || ||||| ||||| |||||||| | Sbjct 1303894 CAGGTCGCGGGCCCGCACCTCCTCCTTGCCGTGGTTCTTGCGCAGATCCAGGAACGCAAA 1303953 Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 | ||| | ||||||||| |||| || || || | | || || || ||||| || || Sbjct 1303954 CACATCGGCATGCCACGGCTCCAGATAGATCGCAAACGCACCTGGCCGCTTGTTGCCGCC 1304013 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 ||| || | ||| | || ||||| || | || | || ||| || | || || || || Sbjct 1304014 CTGGTCGACGTACCGCGCCGTGTTGTTGAACACACGCAGCATCGGCACAAGCCCGTTCGA 1304073 Query 80160 TGTACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 80218 || || ||||| ||| | || || || | || || || || || | || | Sbjct 1304074 CGTGCCGTTGGTGCCCTGCAATGTATGAGCCCGTAGCCCGGATGTTGCTCACGTGCAGCC 1304133 Query 80219 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 80278 | || || || || | || || || ||||| || | ||| || |||||||||| Sbjct 1304134 CAATGCCGCCAGCGTTCTTGGAAATCTGCGCGCACACCTTCAGCGTGTCGTAGATGCCCT 1304193 Query 80279 CTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTG-GTGACGACTAGTT 80337 | ||||| ||||| |||| | || || || || | || | |||| || Sbjct 1304194 CGATGCTGTCATCCGACATGGCCACAAGGAAGCACGACGAGAGCTGCGGGACGCGGCGTG 1304253 Query 80338 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 80397 |||| || || | || || || |||||||| || | ||| |||| || |||||| Sbjct 1304254 CCCGAGTTGAACAGCGTCGGCGACGCGTGCGTGAAGAACTTTGACGACATGAGGTTGTAC 1304313 Query 80398 GTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATG 80457 ||||| || || | || || ||| | || || || | | || ||||| | || | Sbjct 1304314 GTCTCGATCGCCGCGTCAATGTCCGAGCCGTGGATGCCCAGGGACACGCGCATCACCAGG 1304373 Query 80458 TGCTGAGG 80465 ||||| || Sbjct 1304374 TGCTGCGG 1304381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718266761912280