Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq217 100 4e-16 seq162 95.1 2e-14 >seq217 Length=908848 Score = 100 bits (110), Expect = 4e-16 Identities = 298/457 (65%), Gaps = 7/457 (2%) Strand=Plus/Plus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| || || || || || |||||| ||||| || | | || | ||||| || Sbjct 400052 AACAGCACGCAGGCAAAGTCCGTGTGCAGGCCCTCGTCGCGGCAGATCAGCTCGTTCGAG 400111 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || ||||| ||||| ||||| ||||| || ||||| || || |||||||| || || Sbjct 400112 AAGGTCAGTCCAGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATCGACGCAAACGAGCCC 400171 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 42232 || |||||||| || || || ||||||||||| | || | | | || | || | Sbjct 400172 GAGAAGAAGATGCCCTCGACCGCCGCAAAGGCCACCAGGCGCACGCCGAACTTGGCCTCG 400231 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | || || ||||| | ||||| ||||||||||| | || || || | || Sbjct 400232 CGGTTATCGATCCAGCGAAGCGCCCAGTCGGCCTTCTTGCGGATGCACGGGATGTTGTCG 400291 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 || || | || | | ||| || || || | || || || || | || Sbjct 400292 ATAGCGTGGAACAAAAAGTCGCGCTCCTTGGGGTCGCGGATGTACGTGTCAATGAGCAGC 400351 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 ||| | || || || ||||| ||||| |||||| || |||||||| | | ||| Sbjct 400352 GAGTACGTCTCCGAGTGGATGTTCTCAATCATCATCTGGAAGCCGTAGAACGACCGCGCC 400411 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAG--CTAAATTTTCGTTCACTATTCCGT 42470 |||| | ||| || || || | ||| |||| | | | || ||||| || || |||| Sbjct 400412 TCGGGGATCTGAACCTCGGTGCTAAA--GTTCTGCACCAGGTTCTCGTTGACGATGCCGT 400469 Query 42471 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 42507 | ||| ||||| ||||| | || | || ||||| Sbjct 400470 CCGAGGCAGCAAAGAACGCGAGCACGTACTTGATAAA 400506 >seq162 Length=1352108 Score = 95.1 bits (104), Expect = 2e-14 Identities = 336/520 (65%), Gaps = 4/520 (1%) Strand=Plus/Plus Query 71988 CGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAAT 72047 ||| || | || ||||||| || | || | || || ||||| || ||||| || || Sbjct 1303819 CGGGCAGAACAGCGACCACTTGCCGCCGGCAATGACGCGCTTCATGAACAGATCCGGGAT 1303878 Query 72048 CCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAA 72106 ||| || || ||| || || || | || | |||||| || || ||||| | Sbjct 1303879 CCACAGCGC-ATAGAACAGGTCGCGGGCCCGCACCTCCTCCTTGCCGTGGTTCTTGCGCA 1303937 Query 72107 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCG 72166 |||| |||||||| | | ||| | ||||||||| |||| || || || | | || | Sbjct 1303938 GATCCAGGAACGCAAACACATCGGCATGCCACGGCTCCAGATAGATCGCAAACGCACCTG 1303997 Query 72167 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 72226 |||| ||||| || ||||| || | ||| | || ||||| || | || | || ||| | Sbjct 1303998 GCCGCTTGTTGCCGCCCTGGTCGACGTACCGCGCCGTGTTGTTGAACACACGCAGCATCG 1304057 Query 72227 GAATAATACCATTGGATGCACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATA 72285 | | || || || || | || ||||| ||| | || || || | || || || Sbjct 1304058 GCACAAGCCCGTTCGACGTGCCGTTGGTGCCCTGCAATGTATGAGCCCGTAGCCCGGATG 1304117 Query 72286 TTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 72345 ||||| | || || || || || || | || || || ||||| || | | Sbjct 1304118 TTGCTCACGTGCAGCCCAATGCCGCCAGCGTTCTTGGAAATCTGCGCGCACACCTTCAGC 1304177 Query 72346 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 72405 || || ||||||||||| || || |||||| |||| | || || || || | Sbjct 1304178 GTGTCGTAGATGCCCTCGATGCTGTCATCCGACATGGCCACAAGGAAGCACGACGAGAGC 1304237 Query 72406 TG-GTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 72464 || | |||| || |||| || || | || || || |||||||| || | ||| Sbjct 1304238 TGCGGGACGCGGCGTGCCCGAGTTGAACAGCGTCGGCGACGCGTGCGTGAAGAACTTTGA 1304297 Query 72465 AGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC 72504 |||| || ||||||||||| || || | || || ||| Sbjct 1304298 CGACATGAGGTTGTACGTCTCGATCGCCGCGTCAATGTCC 1304337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137295642520