Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq217 315 1e-80 seq162 176 7e-39 seq160 136 6e-27 >seq217 Length=908848 Score = 315 bits (348), Expect = 1e-80 Identities = 596/866 (69%), Gaps = 21/866 (2%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || |||| ||| || || || ||||| |||||||| ||| |||| || || | Sbjct 400640 TGTTCCCGATCAAGTACCACGAGATCTGGGAGATGTACAAGAAGCACGAGGCGTCGTTCT 400581 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||||| ||| || |||| ||||| ||||| || | | ||||| | || ||| | Sbjct 400580 GGACGGCCGAGGAAATCGACCTGTCGCAGGACATGGGCCACTGGGACAACCGCCTGAACG 400521 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 | | ||||| | ||||| | || | | || |||||||| | ||| || || |||| Sbjct 400520 ACAACGAGCGTCACTTTATCAAGTACGTGCTCGCGTTCTTTGCTGCCTCGGACGGCATCG 400461 Query 125176 TCAACGACAATCTGTTGACACGATTCTCTCAA-GAGTTGACCATTCCAGAGGTGTCGTGC 125234 ||||||| || ||| || || | | | || ||| | || || |||| | || Sbjct 400460 TCAACGAGAACCTGGTG-CAGAACTTTAGCACCGAGGTTCAGATCCCCGAGGCGCGGTCG 400402 Query 125235 TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATT 125294 || ||||| ||||| || |||||||||||| | |||||||| | |||||| || ||| Sbjct 400401 TTCTACGGCTTCCAGATGATGATTGAGAACATCCACTCGGAGACGTACTCGCTGCTCATT 400342 Query 125295 GACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCGACACGGT 125353 |||| |||||| ||||| || ||| | | || | | || |||| ||||||| | Sbjct 400341 GACACGTACATCCGCGACCC-CAAGGAGCGCGACTTTTTGTTCCACGCTATCGACAACAT 400283 Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTC 125413 |||| || || || ||||| | |||| | |||| ||||||||| || | || | Sbjct 400282 CCCGTGCATCCGCAAGAAGGCCGACTGGGCGCTTCGCTGGATCGATAACCGCGAGGCCAA 400223 Query 125414 GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT 125473 || || || | |||||||| || || || || |||||||||||||| ||||| || Sbjct 400222 GTTCGGCGTGCGCCTGGTGGCCTTTGCGGCGGTCGAGGGCATCTTCTTCTCGGGCTCGTT 400163 Query 125474 TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGA 125533 |||| | ||||| ||||||||||||||||| || ||||| |||||||| | ||||| Sbjct 400162 TGCGTCGATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCTGGACTGACCTTCTCGAACGA 400103 Query 125534 GTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTA 125593 | | || | || ||||||||||| ||| ||||||||| | ||||| | || | Sbjct 400102 GCTGATCTGCCGCGACGAGGGCCTGCACACGGACTTTGCCTGCGTGCTGTT---CCACCA 400046 Query 125594 TCTGC-GTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCG 125652 |||| ||||| || | || ||| | | || || | || | ||||| || | Sbjct 400045 CCTGCAGTCCC---CGCCG-GCCGCCGAGGTCA---TCCTCCAGATCATCACCGAGGCTG 399993 Query 125653 TGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACT 125712 | | || || || ||||| || |||| | || || || |||| ||||||||| Sbjct 399992 TCACCATCGAGCAGGAGTTCCTGTCCGAGGCGCTGCCCGTGTCACTGATCGGCATGAACG 399933 Query 125713 GCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTG 125772 |||||| |||||| |||| || |||||||| || || || || ||| || || | Sbjct 399932 CCAAGCTCATGTGCCAGTATATCGAGTTTGTTGCTGACCGCCTGCTGGTCGCTCTG---G 399876 Query 125773 GC---CGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAG 125829 || | |||| ||| |||| || ||||| || |||||| || || || | Sbjct 399875 GCCAGCCCAAGCACTACCTGGCCACCAACCCCTTCGACTTCATGGACATGATCTCGATGC 399816 Query 125830 AGGGTAAGACCAACTTTTTCGAGAAG 125855 |||| ||||||||||| ||||||||| Sbjct 399815 AGGGCAAGACCAACTTCTTCGAGAAG 399790 >seq162 Length=1352108 Score = 176 bits (194), Expect = 7e-39 Identities = 378/558 (68%), Gaps = 8/558 (1%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||| | | || || ||||| ||||| | ||| ||| | | | || Sbjct 1304085 ACCAACGGCACGTCGAACGGGCTTGTGCCGATGCTGCGTGTGTTCAACAACACGGCGCGG 1304026 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||||||||| || |||||||| || | || |||| |||| || ||| Sbjct 1304025 TACGTCGACCAGGGCGGCAACAAGCGGCCAGGTGCGTTTGCGATCTATCTGGAGCCGTGG 1303966 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 || || || || |||| || | || ||||||| ||| ||| || |||| || Sbjct 1303965 CATGCCGATGTGTTTGCGTTCCTGGATCTGCGCAAGAACCACGGCAAGGAGGAGGTGCGG 1303906 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 ||| | ||| |||| ||||| || ||| | || ||| |||||||||||||||||| | | Sbjct 1303905 GCCCGCGACCTGTTCTATGCGCTGTGGATCCCGGATCTGTTCATGAAGCGCGTCATTGCC 1303846 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 || ||| | ||| || | ||||| || | ||||||| || || |||||| Sbjct 1303845 GGCGGCAAGTGGTCGCTGTTCTGCCCGCACGAGGCACCCGGCATGCAGGAGGTGTGGGGC 1303786 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAG--CAAG--AGGGCCGATACGTGAGACG 97162 || |||||||||||| ||| || |||||| || | || | | || ||| Sbjct 1303785 GATGAGTTTGAGGCCCTGTATACCAAGTACGAGAACACGCCTGGCCTGGCGCGCTCGACC 1303726 Query 97163 AGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 | |||| |||| |||| |||||| | || ||| || || ||| | ||||| || | | Sbjct 1303725 A-TCGACGCAC-AGAAGCTGTGGTATGCGATCCTGGACGCGCAGATCGAGACGGGGAACC 1303668 Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281 ||| ||| || ||||||||| | || ||||| ||||| | || | ||||| | Sbjct 1303667 CGTTCATGCTGTACAAGGATGCATGCAACCGCAAGTCGAACCAGCAGAACCTCGGCACGA 1303608 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGG-CA 97340 ||||| |||| || |||||||| || || || |||||| | || |||||| || | Sbjct 1303607 TCAAGTGCTCGAACCTGTGCACAGAGATCGTCGAGTACTCGAGCCCCGACGAGGTGGCCT 1303548 Query 97341 GTTTGCGTTCTGGCATCG 97358 || ||| ||||| ||| Sbjct 1303547 GTGTGCAACCTGGCGTCG 1303530 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 98076 ATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTAC 98135 || || ||||| || || | || | ||||||||||||||| || ||| | || | || Sbjct 1302797 ATTGACATGGCGGCGGATCGTGGCGCCTACATTGACCAGAGCCAGTCGCTGAACATCCAC 1302738 Query 98136 GTTGCCGAGCCCACCTAC-AGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGG 98194 | | || ||||| |||| || | |||| ||||| || || |||| ||||| ||||| Sbjct 1302737 ATGGACGGGCCCAACTACCAGAAGC-TGACGTCGATGCATTTCTACGGCTGGAAGAAGGG 1302679 Query 98195 CCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGC 98233 || ||||| ||||||||||| ||| | || ||| |||| Sbjct 1302678 GCTGAAGACCGGCATGTACTACCTGCGCACCAAGCCGGC 1302640 >seq160 Length=71855 Score = 136 bits (150), Expect = 6e-27 Identities = 280/409 (68%), Gaps = 8/409 (2%) Strand=Plus/Minus Query 96955 TGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGG 97014 ||||||| ||| ||| || |||| || ||| | ||| |||| ||||| || ||| Sbjct 71843 TGCGCAAGAACCACGGCAAGGAGGAGGTGCGGGCCCGCGACCTGTTCTATGCGCTGTGGA 71784 Query 97015 TGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCG 97074 | || ||| |||||||||||||||||| | ||| ||| | || | || | ||||| Sbjct 71783 TCCCGGATCTGTTCATGAAGCGCGTCATTGCCGGCGGCAAGTGTCG-CTGTTCTGCCCGC 71725 Query 97075 ACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCT 97134 || | ||||||| || || |||||||| |||||||||||| ||| || | Sbjct 71724 ACGAGGCACCCGGCATGCAGGAGGTGTGGGGCGATGAGTTTGAGGCCCTGTATACCAAGT 71665 Query 97135 ACGAG--CAAG--AGGGCCGATACGTGAGACGAGTCGATGCACGAGAA-CTGTGGAAGGC 97189 ||||| || | || | | || ||| | |||| |||| |||| |||||| | || Sbjct 71664 ACGAGAACACGCCTGGCCTGGCGCGCTCGACCA-TCGACGCAC-AGAAGCTGTGGTATGC 71607 Query 97190 CATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAA 97249 ||| || || ||| | ||||| || | |||| ||| || ||||||||| | || Sbjct 71606 GATCCTGGACGCGCAGATCGAGACGGGGAACCCGTTCATGCTGTACAAGGATGCATGCAA 71547 Query 97250 TCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAAT 97309 ||||| ||||| | || | ||||| |||||| |||| || |||||||| || || Sbjct 71546 CCGCAAGTCGAACCAGCAGAACCTCGGCACGATCAAGTGCTCGAACCTGTGCACAGAGAT 71487 Query 97310 TGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCG 97358 || |||||| | || |||||| ||| || ||| ||||| ||| Sbjct 71486 CGTCGAGTACTCGAGCCCCGACGAGGTGGCTGTGTGCAACCTGGCGTCG 71438 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 98076 ATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTAC 98135 || || ||||| || || | || | ||||||||||||||| || ||| | || | || Sbjct 70711 ATTGACATGGCGGCGGATCGTGGCGCCTACATTGACCAGAGCCAGTCGCTGAACATCCAC 70652 Query 98136 GTTGCCGAGCCCACCTAC-AGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGG 98194 | | || ||||| |||| || | |||| ||||| || || |||| ||||| ||||| Sbjct 70651 ATGGACGGGCCCAACTACCAGAAGC-TGACGTCGATGCATTTCTACGGCTGGAAGAAGGG 70593 Query 98195 CCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGC 98233 || ||||| ||||||||||| ||| | || ||| |||| Sbjct 70592 GCTGAAGACCGGCATGTACTACCTGCGCACCAAGCCGGC 70554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057097244520