Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq153 107 4e-18 seq2 98.7 2e-15 >seq153 Length=77323 Score = 107 bits (118), Expect = 4e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | ||||| || || || || || Sbjct 48476 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 48417 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || ||||| || || ||||| || ||||||||||| ||| || Sbjct 48416 GCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATCTTCTGC-TT 48358 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | |||||| | || ||||| || || |||||||| ||||| || || Sbjct 48357 GACGTTGTCGATGGTATCCGACGACTCCACCTCGAGGGTGATAGTCTTGCCAGTGAGGGT 48298 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 48297 CTTCACGAAAATCTGCAT 48280 Score = 104 bits (114), Expect = 5e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| || ||||| | ||||| Sbjct 48720 AAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTC 48661 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || || | ||| || ||||| || || ||||| || || Sbjct 48660 CTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTC 48601 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||||| ||| || || || || | ||| || | || ||||| || || |||| Sbjct 48600 CTGAATCTTCTGC-TTGACGTTGTCAATGGTGTCCGACGACTCCACCTCGAGGGTGATAG 48542 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || || || || || |||||||| Sbjct 48541 TCTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 48508 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | || || || || || || || Sbjct 48248 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCG 48189 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || ||||| || || ||||| || ||||||||||| ||| || Sbjct 48188 GCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATCTTCTGC-TT 48130 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| || | || ||||| || || |||||||| || || || || Sbjct 48129 GACGTTGTCGATGGTGTCCGACGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGGGT 48070 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 48069 CTTCACAAAAATCTGCAT 48052 >seq2 Length=801100 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | ||||| || || || || || Sbjct 378241 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 378182 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || ||||| || || || || || ||||||||||| ||| || Sbjct 378181 GCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TT 378123 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| || | || ||||| || || |||||||| || || || || Sbjct 378122 GACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATAGTCTTGCCGGTGAGGGT 378063 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 378062 CTTCACAAAAATCTGCAT 378045 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | ||||| || || || || || Sbjct 378697 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 378638 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || ||||| || || || || || ||||||||||| ||| || Sbjct 378637 GCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TT 378579 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| || | || ||||| || || |||||||| || || || || Sbjct 378578 GACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATAGTCTTGCCGGTGAGGGT 378519 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 378518 CTTCACGAAAATCTGCAT 378501 Score = 89.7 bits (98), Expect = 1e-12 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | ||||| || || || || || Sbjct 378469 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 378410 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || ||||| || || || || || ||||||||||| ||| || Sbjct 378409 GCGAAGATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TT 378351 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| || | || ||||| || || || ||||| || || || || Sbjct 378350 GACGTTGTCGATGGTGTCCGACGACTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGT 378291 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 378290 CTTCACGAAAATCTGCAT 378273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151395051229716