Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 seq153 107 2e-18 seq155 95.1 1e-14 seq1 95.1 1e-14 seq151 82.4 6e-11 >seq2 Length=801100 Score = 113 bits (124), Expect = 4e-20 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | ||| || || || || |||||| || |||||||| || | Sbjct 378272 ACCACCGCGCAGGCGAAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 378213 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || ||||||| |||||||| ||| || | || | |||||||| || ||| Sbjct 378212 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGG 378153 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | ||||||||| ||| |||||||||| | | || ||||| || | |||||| Sbjct 378152 GATGCCCTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCG--ATGGTGTCCGACGACTCC 378095 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 ||||| || || || || |||||||| || ||||||||||||||||| || Sbjct 378094 ACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCATGGT 378042 Score = 113 bits (124), Expect = 4e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | ||| || || || || |||||| || |||||||| || | Sbjct 378500 ACCACCGCGCAGGCGAAGCACCAAGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 378441 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || ||||||| |||||||| ||| || | || | |||||||| || ||| Sbjct 378440 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGG 378381 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | ||||||||| ||| |||||||||| | | || ||||| || | |||||| Sbjct 378380 GATGCCCTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCG--ATGGTGTCCGACGACTCC 378323 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || |||||||| || ||||| ||||||||||| Sbjct 378322 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 378273 Score = 102 bits (112), Expect = 7e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || | | || ||||||| |||||||| ||| || | Sbjct 378692 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 378633 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | |||||||| || ||| | | ||||||||| ||| |||||||||| | Sbjct 378632 GATGAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGCTTGACGTT 378573 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| || | |||||| ||||| || || || || |||||||| || ||| Sbjct 378572 GTCG--ATGGTGTCCGACGACTCCACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTC 378515 Query 48713 ACAAAAATCTGCAT 48726 || ||||||||||| Sbjct 378514 ACGAAAATCTGCAT 378501 >seq153 Length=77323 Score = 107 bits (118), Expect = 2e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | ||| | || || || |||||| || |||||||| || | Sbjct 48507 ACCACCGCGCAGGCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 48448 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || ||||||| |||||||| ||| || | || | |||||||| || ||| Sbjct 48447 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGG 48388 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | |||||||||| ||| |||||||||| | | || |||||||| | |||||| Sbjct 48387 GATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCG--ATGGTATCCGACGACTCC 48330 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || || ||||| || ||||| ||||||||||| Sbjct 48329 ACCTCGAGGGTGATAGTCTTGCCAGTGAGGGTCTTCACGAAAATCTGCAT 48280 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || | | | || || ||||||| |||||||| ||| || Sbjct 48699 CTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGC-CGTCCTCGAGCTGCTTGCCGGCGA 48641 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | |||||||| || ||| | | |||||||||| ||| |||||||||| Sbjct 48640 AGATGAGGCGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGT 48581 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||||| || | |||||| ||||| || || || || |||||||| || |||| Sbjct 48580 TGTCAATGGTGTCCGACGACTCCACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTCA 48521 Query 48714 CAAAAATCTGCAT 48726 | ||||||||||| Sbjct 48520 CGAAAATCTGCAT 48508 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||||| | | ||| | || || || |||||| || |||||||| || | Sbjct 48279 ACCACCGCGCAGGCGGAGCACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCCGA 48220 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || | ||||| |||||||| ||| || | || | |||||||| || ||| Sbjct 48219 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGCGG 48160 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | |||||||||| ||| |||||||||| | | || ||||| || | |||||| Sbjct 48159 GATGCCTTCCTTGTCCTGAATCTTCTGCTTGACGTTGTCG--ATGGTGTCCGACGACTCC 48102 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || || || || |||||||| || ||||||||||||||||| Sbjct 48101 ACCTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACAAAAATCTGCAT 48052 >seq155 Length=76293 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| || |||||||| || | || || || ||||||| ||||| Sbjct 26908 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA-AAGGGTGCGGCCGTCCTCGAGCTG 26850 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | |||||||| || || | || ||||||||| || || Sbjct 26849 CTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTT 26790 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 |||||| | | ||||| |||| ||||||| ||||| || ||||| || || || Sbjct 26789 CTGCTTAACGTTATCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGT 26730 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||||||||| Sbjct 26729 CAGGGTCTTAACGAAAATCTGCAT 26706 >seq1 Length=3302357 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| || |||||||| || | || || || ||||||| ||||| Sbjct 872062 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA-AAGGGTGCGGCCGTCCTCGAGCTG 872004 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | |||||||| || || | || ||||||||| || || Sbjct 872003 CTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTT 871944 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 |||||| | | ||||| |||| ||||||| ||||| || ||||| || || || Sbjct 871943 CTGCTTAACGTTATCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGT 871884 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||||||||| Sbjct 871883 CAGGGTCTTAACGAAAATCTGCAT 871860 >seq151 Length=1709611 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || | || || || ||||||| |||||||| ||| || Sbjct 449749 CTCCTTCTGGATGTTGTAGTCCGA-AAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGA 449691 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--T 48651 | || | |||||||| || || | | ||||||||| || |||||||||| | Sbjct 449690 AGATGAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTGACGT 449631 Query 48652 AGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711 | || ||||| || | |||||| ||| | || ||||| || || || || || || Sbjct 449630 TGTCG--ATGGTGTCCGACGACTCCACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTT 449573 Query 48712 CACAAAAATCTGCAT 48726 || ||||||||||| Sbjct 449572 GACGAAAATCTGCAT 449558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421250034582227