Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Linderina_20pennispora_20[genbank_20GCA_5F002104995.1_202017-04-20] 227 sequences; 26,202,545 total letters Query= NC_005946.1 Length=105903 Score E Sequences producing significant alignments: (Bits) Value seq224 84.2 1e-11 seq57 84.2 1e-11 >seq224 Length=36005 Score = 84.2 bits (92), Expect = 1e-11 Identities = 110/146 (75%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | || |||| |||||| ||||||||||||| |||||||||||| || || Sbjct 29993 GGTCATACGCGACGGAATGGCGTGCGGGTTGATGATGATGTCGGGCACCACGCCCTCGGC 29934 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGAC-AGCTCCGCAT-GTCCCCTTTTGCGCCGTG 71535 ||| ||||||||||| || | | || | | | || || ||||| || |||||| Sbjct 29933 CGAGAACGGCATGTCCTC--GGTGCGGTACGTGATGCCAATAGTGCCCTTCTG-GCCGTG 29877 Query 71536 -AATGACGCAAACTTGTCGCCCATCT 71560 |||||||||||||||||||||| Sbjct 29876 TCGCGACGCAAACTTGTCGCCCATCT 29851 >seq57 Length=497762 Score = 84.2 bits (92), Expect = 1e-11 Identities = 110/146 (75%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 71418 GGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCCTT 71477 |||||| | || |||| |||||| ||||||||||||| |||||||||||| || || Sbjct 209556 GGTCATACGCGACGGAATGGCGTGCGGGTTGATGATGATGTCGGGCACCACGCCCTCGGC 209497 Query 71478 GTCGAAGGGCATGTCCTCCTGGGTCAGGAC-AGCTCCGCAT-GTCCCCTTTTGCGCCGTG 71535 ||| ||||||||||| || | | || | | | || || ||||| || |||||| Sbjct 209496 CGAGAACGGCATGTCCTC--GGTGCGGTACGTGATGCCAATAGTGCCCTTCTG-GCCGTG 209440 Query 71536 -AATGACGCAAACTTGTCGCCCATCT 71560 |||||||||||||||||||||| Sbjct 209439 TCGCGACGCAAACTTGTCGCCCATCT 209414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338763862786008